Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq3889 143 4e-30 seq427 143 4e-30 seq969 140 5e-29 seq805 140 5e-29 seq708 127 3e-25 seq2190 125 1e-24 seq1324 107 3e-19 seq1123 104 4e-18 >seq3889 Length=47272 Score = 143 bits (158), Expect = 4e-30 Identities = 177/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||||||||||||||||||| || || || | |||||||| | ||||||| Sbjct 3440 GAGACAACATCCAAGGAATCACCAAGCCTGCGATTCGAAGATTGGCTCGTAGAGGTGGAG 3499 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 |||||||| || ||| || |||| || |||| ||||| ||| | |||||||| | Sbjct 3500 TCAAGCGTATCAGTGGTCTGATCTACGAGGAGACTCGTGGTGTCCTCAAGATCTTTTTGG 3559 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| |||||| | ||| || || || ||||||||||| | | |||||||| ||| Sbjct 3560 AGAACGTTATTCGTGACGCCGTCACTTACACCGAGCACGCCAGGAGGAAGACTGTGACCG 3619 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 ||||||| |||| || || | || | ||||| | | |||| || || || ||| Sbjct 3620 CCATGGACGTCGTTTACGCTCTCAAGAGGCAAGGAAGGACTCTTTACGGATTCGGCGGTT 3679 Query 16698 AA 16699 || Sbjct 3680 AA 3681 >seq427 Length=232189 Score = 143 bits (158), Expect = 4e-30 Identities = 178/244 (73%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||||||||| ||||| ||||||||||| || || |||||||| |||||| | || || | Sbjct 116593 GAGATAACATTCAAGGTATCACCAAGCCTGCCATTCGTCGTCTTGCTCGTAGAGGAGGTG 116652 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 |||||||| | || || |||| ||||||| | | || | |||||||||||| Sbjct 116653 TCAAGCGTATTAGCGGTCTGATCTACGAAGAGACCAGAGGAGTCCTTAAGATCTTCCTCG 116712 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || || | || ||| || ||| || |||||||| | | ||||| || || Sbjct 116713 AGAATGTCATTCGCGACGCTGTCACCTACACGGAGCACGCCAGGAGGAAGACGGTGACTG 116772 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 | |||||| | |||||||||||||| | ||||| |||| | || ||||| || | | Sbjct 116773 CTATGGATGTGGTCTATGCATTGAAGAGGCAAGGACGTACTCTCTACGGTTTCGGCGGCT 116832 Query 16698 AATC 16701 |||| Sbjct 116833 AATC 116836 >seq969 Length=45493 Score = 140 bits (154), Expect = 5e-29 Identities = 176/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||||||||||||| |||||||| || |||||||| |||||| | || |||| Sbjct 40805 GAGACAACATCCAAGGAATCACAAAGCCAGCGATTCGTCGTCTTGCTCGTAGAGGAGGAG 40864 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | || || || |||||| |||| ||||| | | | || ||||||||||| ||| Sbjct 40865 TGAAACGAATCAGCGGATTGATCTACGAAGAAACGAGAGGAGTGTTGAAGATCTTTCTCG 40924 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || || |||||| | || || |||||||||| | ||||| || || Sbjct 40925 AGAATGTGATTAGAGATGCTGTGACGTACACTGAGCACGCTAGGAGGAAGACGGTGACTG 40984 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 | |||||| | || ||||| ||||| | ||||| || | ||||||| || || ||| Sbjct 40985 CTATGGATGTTGTTTATGCTTTGAAGAGACAAGGACGAACTCTTTATGGATTCGGTGGTT 41044 Query 16698 AA 16699 || Sbjct 41045 AA 41046 >seq805 Length=65335 Score = 140 bits (154), Expect = 5e-29 Identities = 176/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||||||||||||||||||| || || || | ||||||| | ||||||| Sbjct 3031 GAGACAACATCCAAGGAATCACCAAGCCTGCGATTCGAAGATTGGCTCGAAGAGGTGGAG 3090 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 |||||||| || ||| || |||| || |||| ||||| ||| | |||||||| | Sbjct 3091 TCAAGCGTATCAGTGGTCTGATCTACGAGGAGACTCGTGGTGTCCTCAAGATCTTTTTGG 3150 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| |||||| | ||| || || || ||||||||||| | | |||||||| ||| Sbjct 3151 AGAACGTTATTCGTGACGCCGTCACTTACACCGAGCACGCCAGGAGGAAGACTGTGACCG 3210 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 ||||||| |||| || || | || | ||||| | | |||| || || || ||| Sbjct 3211 CCATGGACGTCGTTTACGCTCTCAAGAGGCAAGGAAGGACTCTTTACGGATTCGGCGGTT 3270 Query 16698 AA 16699 || Sbjct 3271 AA 3272 >seq708 Length=141597 Score = 127 bits (140), Expect = 3e-25 Identities = 189/268 (71%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||| | ||||| | | ||| || |||||||| || ||||| || || || || || Sbjct 28177 GCGAAGAGGCATCGGAAAGTTCTCCGGGATAACATTCAGGGAATTACGAAACCGGCAATT 28236 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||| |||| | | ||||| || |||||| | || ||| |||||||||||| | Sbjct 28237 CGACGTTTGGCGAGGAGAGGTGGTGTGAAGCGTATAAGCGGTTTGATCTATGAAGAGACT 28296 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| |||| | |||||||| || ||| || || | ||||||| | || || ||| Sbjct 28297 CGTGGTGTTCTCAAGATCTTTCTTGAGAATGTGATTCGTGATGCTGTTACTTACACTGAG 28356 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| || ||||| || || | |||||| | |||||||| ||||| | || || Sbjct 28357 CACGCTCGCCGGAAGACGGTTACGGCGATGGATGTTGTCTATGCGTTGAAGAGGCAGGGA 28416 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAAT 16700 || | | ||||| || || ||| || Sbjct 28417 CGAACTCTCTATGGATTCGGCGGTTGAT 28444 >seq2190 Length=30740 Score = 125 bits (138), Expect = 1e-24 Identities = 189/269 (70%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||| | ||||| | | ||| ||||| ||||||||||| || || || || || || Sbjct 23808 GCCAAGAGGCATCGGAAAGTTCTCCGAGACAACATCCAAGGGATTACGAAACCTGCGATT 23749 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| ||| | | || || || |||||| || ||| ||| |||| || |||| | Sbjct 23748 CGTCGTCTCGCTAGAAGAGGAGGCGTTAAGCGTATCAGTGGTTTGATCTACGAGGAGACT 23689 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| | |||||||| || ||| |||||| | ||| || || || || ||| Sbjct 23688 CGCGGCGTTCTCAAGATCTTTCTAGAGAACGTTATTCGTGACGCCGTCACTTACACGGAG 23629 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || ||| || || |||||||| ||||||| |||| || || | || | ||||| Sbjct 23628 CATGCTCGCCGGAAAACTGTCACGGCCATGGACGTCGTTTACGCTCTCAAGAGACAAGGA 23569 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATC 16701 || | | || || || ||| | ||||| Sbjct 23568 CGAACTCTGTACGGATTCGGAGGCTAATC 23540 >seq1324 Length=48439 Score = 107 bits (118), Expect = 3e-19 Identities = 143/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||||||||||||| ||||| || || ||| | |||||||| | || || | Sbjct 9939 GAGACAACATCCAAGGAATCACTAAGCCGGCGATTCGTAGATTGGCTCGTAGAGGAGGCG 9998 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| | ||| ||| |||| || |||| |||| || | |||||||| | Sbjct 9999 TTAAGCGTATTAGTGGTTTGATCTACGAGGAGACACGTGGCGTCCTCAAGATCTTTTTGG 10058 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||||||| ||| || || || || |||||||| | ||||| || || Sbjct 10059 AGAATGTTATCCGTGACGCCGTCACTTACACAGAGCACGCACGGAGGAAGACGGTGACTG 10118 Query 16638 CCATGGATATCGTCTATGC 16656 |||||||| | || ||||| Sbjct 10119 CCATGGATGTGGTTTATGC 10137 >seq1123 Length=60396 Score = 104 bits (114), Expect = 4e-18 Identities = 168/242 (69%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||||||||||||| ||||| || || || | |||||||| | || || | Sbjct 29952 GAGACAACATCCAAGGAATCACTAAGCCGGCGATTCGGAGATTGGCTCGTAGAGGAGGCG 30011 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| | ||| ||| |||| || |||| |||| || | |||||||| | Sbjct 30012 TTAAGCGTATTAGTGGTTTGATCTACGAGGAGACACGTGGCGTCCTCAAGATCTTTTTGG 30071 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||||||| ||| || || || || |||||||| | ||||| || || Sbjct 30072 AGAATGTTATCCGTGACGCCGTCACTTACACAGAGCACGCACGGAGGAAGACGGTGACTG 30131 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 |||||||| | || ||||| | || | ||||| | | | ||||| || || ||| Sbjct 30132 CCATGGATGTGGTTTATGCTCTTAAGAGACAAGGAAGGACTCTCTATGGATTCGGCGGTT 30191 Query 16698 AA 16699 || Sbjct 30192 AA 30193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79068059262330