Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq504 149 8e-31 seq1269 116 5e-21 >seq504 Length=87311 Score = 149 bits (164), Expect = 8e-31 Identities = 436/637 (68%), Gaps = 65/637 (10%) Strand=Plus/Minus Query 138246 AACGCAATCGCATTCTCTGGTCCCATCGCTGTGTTCGTCAGCGTGTTCC---TGATGTAT 138302 || |||||||||||||||||||| || ||||| || || || |||| | || ||| Sbjct 51320 AATGCAATCGCATTCTCTGGTCCAATTGCTGT-TTTGTTTCTGTCTTCCGAGTAATTTAT 51262 Query 138303 C--CTTTGGGTCAATCCAGTTGGTTCTTTGCTCCCTCCTTTGGTGTGGCAGCAATCTTCC 138360 | | || |||||||| || ||||||||| ||| ||| | | || || | Sbjct 51261 CCACGTTAGGTCAATCTGGT--GTTCTTTGC-GCCTATTTT-------TACCTATATTTC 51212 Query 138361 GATTCCTGTTGTTCCTTC--AGGGTTTCCATAACTGGACCCTCAACCCCTTTCATATGAT 138418 ||||| | | || ||| ||| || ||||| ||||| | ||||| ||||||||||| Sbjct 51211 GATTCATCCTTTTTTTTCCAAGGCGTTTCATAATTGGACATTGAACCCATTTCATATGAT 51152 Query 138419 GGG-CGTAGCAGGTATTCT--TGGTGGTGCTCTGCTCTG-TGCTATTCATGGTGCTAC-A 138473 ||| || || ||| | || || | |||||||| || ||||||||||||||||| Sbjct 51151 GGGAAGTCGCCGGTGTACTGGCGGCGCGGCTCTGCTATGCGGCTATTCATGGTGCTACTG 51092 Query 138474 GTAGAAAATACTTTGTATGAAGATGGCGAACAAT---------CAAATAC-TTTTAAAGC 138523 |||||||||||||| | ||||||||| | || | |||| || || Sbjct 51091 GTAGAAAATACTTTATTTGAAGATGGTGGGGGATTTTGTGGCAGAGATACATTCCGCTGC 51032 Query 138524 ATTTGAACCTACTCAAGAAGAAGAAACCTA-TTCAATGGT-TACTGCT--AACCGTTACT 138579 ||| | || ||||||| |||||||| || ||||||||| || ||| | ||| | | Sbjct 51031 TTTTAACCCAACTCAAGCCGAAGAAACTTATTTCAATGGTCAACCGCTACACCCGCTTTT 50972 Query 138580 GGTCGCAAATCTTT--GGAATTGCTTTTAGTAA--TAAGCGTTGGCTTCAC--TTCT--T 138631 |||| ||||||||| || ||||||| || ||| |||||||||||| |||| | Sbjct 50971 GGTCACAAATCTTTTGGGGGTTGCTTTATCCAATTTAAACGTTGGCTTCACATTTCTTGT 50912 Query 138632 TATGCTCTTTG--TTCC-CGT-CATGGGTCTCTGGACTAGTAGTATTGGTATTATTGGTC 138687 ||| | |||| | || ||| | ||| | || | | | |||| | | |||| Sbjct 50911 CATGTTATTTGCCTACCGCGTAAACTGGTTTATGTGATGATCCTCTTGGAGTAGTCGGTC 50852 Query 138688 TTGCTCTT-AACCTACGAGCGTATGATTTCGTAT-CGCAAGAAATT---CGTGCAGCAGA 138742 | ||| || | |||||| | ||||| ||||| | | || |||||| || |||| || Sbjct 50851 TAGCTTTTGAGCCTACG-GACTATGACTTCGTTTGCCCAGGAAATTCCGCGCCCAGCGGA 50793 Query 138743 AGATCCTGAATT--CGAGACC-TTCTA-CACCAAGAA--CATTCTTCTGA-ATGAA--GG 138793 |||||| ||||| |||||| ||||| || || || |||||| | | | ||| || Sbjct 50792 AGATCCGGAATTTGGGAGACCTTTCTATTACTAACAAAGTATTCTTTTAACACGAAAGGG 50733 Query 138794 TCTGCGTGCCT-GGATGGCTCCTGTGGATCAACCTCA 138829 | | ||||| | ||||||| || ||||| ||||| Sbjct 50732 TATTCGTGCTTGGGATGGCGGCTCAAGATCAGCCTCA 50696 >seq1269 Length=73620 Score = 116 bits (128), Expect = 5e-21 Identities = 251/346 (73%), Gaps = 32/346 (9%) Strand=Plus/Minus Query 135920 ATGTTGGGAGT-TGCTGG-GGTCTTCGGTGGTTCTCTGTTCTC-TGCTATGCATGGATCT 135976 ||||||| || || ||| ||| ||||| | | | || | | |||||||||||| || Sbjct 6700 ATGTTGGAAGCCTGGTGGTGGTATTCGGCGCTGCCCTACTTTAGTGCTATGCATGGTTCC 6641 Query 135977 CTTG-TCACCTCTAGTCTTGTAC--GTGAGACGACTGAGGTAGAATCCCAGAACT-ATGG 136032 ||| | || |||||| ||||| | || || || || ||||| || | || Sbjct 6640 TTTGGTAACTTCTAGT-TTGTATCAGGGAAACCACAGAAAATGAATCTGCTAATGCAAGG 6582 Query 136033 TTA---CAAGTTCGGTC-AAGAAGAAGAGA-CTTACAACATT-GTT--GCTGCTCATGGT 136084 ||| || ||||||| |||||||||||| ||||||||||| ||| |||||||||||| Sbjct 6581 TTAGGCCAGATTCGGTCCAAGAAGAAGAGAACTTACAACATTTGTTAGGCTGCTCATGGT 6522 Query 136085 TACTTC-GGTCGTCTGA--TCTTCCAATATGCGTCGT----TCAACAACT-CTCGTTCGC 136136 || || || || ||| ||||||||||||| | || ||||||||| ||||||| Sbjct 6521 TATTTTTGGCCGATTGACATCTTCCAATATGC-TAGTTTCATCAACAACTCCTCGTTCTT 6463 Query 136137 TACACTTTTTC-CT-TGCTGCTTGG-CCTGTTGT-CGGTATCTG-GTTTGC-TGCCCTGG 136190 |||| || ||| || || |||||| || || || ||||| || |||| | ||| | | Sbjct 6462 TACATTTCTTCTCTAGGCGGCTTGGCCCGGTAGTAGGGTATTTGTGTTTACTTGCTTTAG 6403 Query 136191 GCGTATCTA-CGATGGCGTTCAACCTCAATGGATTCAACTTCAACC 136235 | ||| || | ||||| |||||||| ||||| ||||| ||||||| Sbjct 6402 GTTTATGTAGCTATGGCTTTCAACCTAAATGGTTTCAATTTCAACC 6357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627906694624000