Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq1269 86.0 2e-12 >seq1269 Length=73620 Score = 86.0 bits (94), Expect = 2e-12 Identities = 239/344 (69%), Gaps = 32/344 (9%) Strand=Plus/Minus Query 19962 CAAGATGAAGAGA-CATATAATATT-GTC--GCTGCACACGGGTACTTTGGGA-GATTGA 20016 ||||| ||||||| | || || ||| || ||||| || || || ||| || |||||| Sbjct 6564 CAAGAAGAAGAGAACTTACAACATTTGTTAGGCTGCTCATGGTTATTTTTGGCCGATTGA 6505 Query 20017 TATTT--CAATATGCTTCTTTCAATAA----TTCTCGTTCTTTACATTTCTT-TCTTG-C 20068 || | ||||||||| ||||| || | ||||||||||||||||||| ||| | | Sbjct 6504 CATCTTCCAATATGCTAGTTTCATCAACAACTCCTCGTTCTTTACATTTCTTCTCTAGGC 6445 Query 20069 TACTTTCCCCG-TGGTTGGC-ATATG-GCTTACCTCCATG-GGAATCTGCA-CTATGGCT 20123 ||| |||| | || || || || | |||| | | | || | || | |||||||| Sbjct 6444 GGCTTGGCCCGGTAGTAGGGTATTTGTGTTTACTTGCTTTAGGTTTATGTAGCTATGGCT 6385 Query 20124 TTCAACCTTAATGGTTTTAACTTTAACC-----AGTCA--GTAGTTGATGTCAACGGAAA 20176 |||||||| |||||||| || || |||| | ||| ||||||||| ||| | Sbjct 6384 TTCAACCTAAATGGTTTCAATTTCAACCCCCCAAATCAGTGTAGTTGATAGCAAGGACGT 6325 Query 20177 GATAATCCCA-ACATGGGCTGATGTATTAAATAGAGCTAACCTCGGAT-TTGAAGTTAT- 20233 | |||| | || ||||||||| | | || | | |||||| || | | |||||||| Sbjct 6324 GTTAATTGAATACTTGGGCTGATATTATTAACCGTGGTAACCTTGGGTATGGAAGTTATG 6265 Query 20234 GCACGAGCGCA-ATGCTC---ATAACTTCCCACTTGATTTAGCT 20273 ||| || || | | |||| ||||||||||| || ||||| Sbjct 6264 GCATGAACGTACACGCTCCAACGAACTTCCCACTAGACCTAGCT 6221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144428203944360