Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq86 102 1e-16 seq1269 95.1 2e-14 >seq86 Length=255091 Score = 102 bits (112), Expect = 1e-16 Identities = 244/363 (67%), Gaps = 12/363 (3%) Strand=Plus/Minus Query 194583 GAAACCTGAGTATGTATTTCTTGCTGCTGCTAAGGTAGGTGGTATAGGTGGTAACTCTAC 194642 |||||||| ||||| | || ||||| ||||| || ||||| || || ||| ||| Sbjct 209458 GAAACCTGTTTATGTCATCCTCGCTGCAGCTAAAGTCGGTGGGATTCATGCCAACAATAC 209399 Query 194643 CTATCCTGCCGATTTCATCTATGACAATCTGATGATTCAGACAAATGTTATTGATGCTGC 194702 || || || |||||||| || |||||| || ||||| ||||| ||| | |||| Sbjct 209398 ATACCCAGCTGATTTCATTGGTGTCAATCTCCAAATCCAGACCAATGTGATTCACTCTGC 209339 Query 194703 ATATCGTAATGGAGTTAAGAAACTATTGTTTCTAGGTTCATCTTGCATCTATCCTAAGTT 194762 || || || ||||||||||| | || || ||||| |||||||| || || || || Sbjct 209338 TTACAAAAACGGCGTTAAGAAACTCCTCTTCCTCGGTTCTTCTTGCATTTACCCCAAATT 209279 Query 194763 ---TCCAAAGATACCTATTACAGAGGATCAG--TTACTTGCTAGTCCTTTGGAAGAATCT 194817 ||| || ||||| | || ||| | | || || |||| | ||| | Sbjct 209278 TGCTCCTCAG---CCTATACCTGA--ATCCGCTCTTCTCACTGGTCCGCTTGAACCGACA 209224 Query 194818 AAT-AGTGCTTATGCAATTGCAAAGATAGCAGGTATGAGGATGTGTCAAGCATATCGTCA 194876 ||| | || || ||||| || ||||| || || || | |||||||||||| || || Sbjct 209223 AATGAATG-GTACGCAATCGCTAAGATTGCTGGCATTAAGATGTGTCAAGCTTACCGGAT 209165 Query 194877 GCAGTATGGATTTAATGCAATATCATTAATGCCTACTAATCTATACGGACCTAATGATAA 194936 ||| || || |||| || || ||||| || ||||| || || | ||||| || Sbjct 209164 TCAGCATCAATGGGATGCCATCTCCGGTATGCCCACAAATCTGTATGGCCAAAATGACAA 209105 Query 194937 TTT 194939 ||| Sbjct 209104 TTT 209102 >seq1269 Length=73620 Score = 95.1 bits (104), Expect = 2e-14 Identities = 242/347 (70%), Gaps = 40/347 (12%) Strand=Plus/Minus Query 212242 CAAGAAGAAGAGA-CATATAACATC-GTT--GCTGCACATGGATACTT-----CGGTAGA 212292 ||||||||||||| | || ||||| ||| ||||| ||||| || || || | || Sbjct 6564 CAAGAAGAAGAGAACTTACAACATTTGTTAGGCTGCTCATGGTTATTTTTGGCCGATTGA 6505 Query 212293 CTTATCTTCCAGTATGCATCATTCAACAACAGCA----GAAGTTTACACTTCTTC-CTCG 212347 | |||||||| ||||| |||| ||||| | | |||||| |||||| || | Sbjct 6504 C--ATCTTCCAATATGCTAGTTTCATCAACAACTCCTCGTTCTTTACATTTCTTCTCTAG 6447 Query 212348 -CATCATGGCCTGTTATCTGTGTATG---GTTAACCT-CTATGGGTATCTGCA-CAATGG 212401 | | ||||| | || | |||| ||| || | || | ||| | || | | |||| Sbjct 6446 GCGGCTTGGCCCGGTAGTAGGGTATTTGTGTTTACTTGCTTTAGGTTTATGTAGCTATGG 6387 Query 212402 CATTCAACCTAAATGGATTCAACTTCAACC-----AATCA--GTTGTTGAT-GCATCAGG 212453 | |||||||||||||| ||||| ||||||| ||||| || |||||| ||| ||| Sbjct 6386 CTTTCAACCTAAATGGTTTCAATTTCAACCCCCCAAATCAGTGTAGTTGATAGCA--AGG 6329 Query 212454 TAAGGTT--GTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTT-GGTATGGAAGT 212510 ||| | |||||||| |||| || ||||| | | |||||| ||||||||||| Sbjct 6328 ACGTGTTAATTGAATACTTGGGCTGATATTATTAACCGTGGTAACCTTGGGTATGGAAGT 6269 Query 212511 TAT-GCACGAAAG-AAATGCAC--AC-AACTTCCCACTTGACTTAGC 212552 ||| ||| ||| | | | || | || ||||||||||| ||| |||| Sbjct 6268 TATGGCATGAACGTACACGCTCCAACGAACTTCCCACTAGACCTAGC 6222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807476362423600