Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq1269 123 3e-23 >seq1269 Length=73620 Score = 123 bits (136), Expect = 3e-23 Identities = 256/354 (72%), Gaps = 38/354 (11%) Strand=Plus/Minus Query 171338 CAAGAAGAAGA-AACATATAACATT-GTT--GCTGCTCATGGATACTTC-GGTAGATTAA 171392 ||||||||||| ||| || |||||| ||| ||||||||||| || || || |||| | Sbjct 6564 CAAGAAGAAGAGAACTTACAACATTTGTTAGGCTGCTCATGGTTATTTTTGGCCGATTGA 6505 Query 171393 --TCTTCCAGTATGCA----TCATTCAACAACTC-TCGTTCATTACACTTCTTC-CTCGC 171444 ||||||| ||||| |||| ||||||||| |||||| ||||| |||||| || | Sbjct 6504 CATCTTCCAATATGCTAGTTTCAT-CAACAACTCCTCGTTCTTTACATTTCTTCTCTAGG 6446 Query 171445 TGTATT--CCCTGTAGTCTG-TGTATG-GTTAACCT-CTATGGGTATCTGTA-CAATGGC 171498 | || ||| ||||| | | | || ||| || | || | ||| | |||| | ||||| Sbjct 6445 CGGCTTGGCCCGGTAGTAGGGTATTTGTGTTTACTTGCTTTAGGTTTATGTAGCTATGGC 6386 Query 171499 ATTCAACCTTAACGGATTCAACTTCAACC-----AATCAGTT--GTAGAT-GCAA--ACG 171548 |||||||| || || ||||| ||||||| ||||||| || ||| |||| ||| Sbjct 6385 TTTCAACCTAAATGGTTTCAATTTCAACCCCCCAAATCAGTGTAGTTGATAGCAAGGACG 6326 Query 171549 GAAAGATTGTACCAACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGA-ATGGAAGTT 171607 |||| | || |||| ||| || ||||| | | |||||||| ||||||||| Sbjct 6325 TGTTAATTGAAT--ACTTGGGCTGATATTATTAACCGTGGTAACCTTGGGTATGGAAGTT 6268 Query 171608 ATG-CATGAAAGAA-ATGCAC--AC-AACTTCCCACTAGACCTAGCATCTGCTG 171656 ||| |||||| | | | || | || |||||||||||||||||||| ||| || Sbjct 6267 ATGGCATGAACGTACACGCTCCAACGAACTTCCCACTAGACCTAGCTGCTGTTG 6214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570213127508400