Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23]
7,810 sequences; 167,352,128 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq422 140 3e-28
>seq422
Length=101449
Score = 140 bits (154), Expect = 3e-28
Identities = 567/883 (64%), Gaps = 26/883 (3%)
Strand=Plus/Plus
Query 21184 TTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGA 21243
||| ||||| |||| |||||| || || || ||||| || || |||| | || || |
Sbjct 43473 TTTCTGATACTCACCAACTCTCTTCTCAAAGAAATTAGTTTTACCTTGAAGCGAAATCAA 43532
Query 21244 TTCCATAAAATCAAATGGATTT-TCAGATTTAAATATTTTATTACAACCCAGTTCTGATA 21302
||||| ||||||||||||| ||| | | | | ||| | || | || |
Sbjct 43533 CTCCATCCAATCAAATGGATTACTCACACC-ATACACCTTACCGTACCCAGGCTCACCCA 43591
Query 21303 ATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCA 21362
|||| | ||| |||||||| || |||||||||| ||| || |||| ||||| || | ||
Sbjct 43592 ATAACCGATCCGCTACAAAATCAATATATTGACTCATCAAATCACGGTTCATCCCAACCA 43651
Query 21363 ATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTA 21422
| |||||| || | || ||| | | || || || || ||| || |
Sbjct 43652 ACGCGCAAGGAAGCGCGTCGCACACAAACTCTCTCTCAATCTCAACCGCATCACGAACAA 43711
Query 21423 TATTTATTATCCTAGATGT--ACTAGGG--GGATACAATAATTGTTTAAACATCAAACAT 21478
| | ||| | ||| | |||| | | || || || | |||| |||||||
Sbjct 43712 T--TGATTTCACACGATCTTCACTAAGCTTGAATCGAAGAAGACTATAAA--TCAAACAA 43767
Query 21479 GCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCG 21538
|| ||||||||||| | |||||| || || || | ||| || || || || | ||
Sbjct 43768 GCGAAATCACAATGAAGACCTTCGTCTCTTGAGATCAGTTCGTTGGAGAAAGTAAGTCCA 43827
Query 21539 GGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT-CCTGAAAAGAAAAT 21597
|||||||| |||| || || ||||| || || || |||| ||| || || ||||| ||
Sbjct 43828 GGCATTAAACCTCGTTTCTTCAACCAGAAAATAGA-ACAAAAGCTACCGGAGAAGAAGAT 43886
Query 21598 GCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCC-AATA 21656
|| |||||| |||||| || || | ||||||| | | || || |||| |
Sbjct 43887 ACCTTCAACGCAAGCAAAAGCCACGATTCGTTCAGC----GAAGCTTTGAGATCCGTCGA 43942
Query 21657 TCCATTTTTCTGCCCATTTTGCCTT-TTCTTTAATACAATCAATTGTATCAATAGCTTTT 21715
||||||| ||||||| ||| || ||| || | |||| ||| || ||||| ||
Sbjct 43943 TCCATTTCATCGCCCATTGTGCTTTCTTCGTT-ACACAAGGAATGGTTTCAATTGCGCGG 44001
Query 21716 AAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATT 21775
|| ||||||| | | || | ||| | || |||||||||
Sbjct 44002 AAGAGATGATCTCTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTATACATC 44061
Query 21776 TCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACAT 21835
||||| || ||||| || ||||| || |||||||||||||| | ||||| ||
Sbjct 44062 TCAGAGTGAATATTCTCAATCGCGATTTGAAATCCGTAAAAGGCACGAGCCTCGGAGATC 44121
Query 21836 TGAACCTCGGAATAAAATC--GTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGG 21893
||||| ||||| |||| ||||| | || || || || || || ||||
Sbjct 44122 TGAACATCGGACATGAATCGGGTTGA--TAGATTCTCTAAAACGATGCCGTCTGATGCGG 44179
Query 21894 CAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTA---ATTTTTTCC 21950
| || || || | || | ||| || || | |||||||| || ||| | |||| ||
Sbjct 44180 CGAAGAAGGCGAGTACGTGTTTGATGAAGTGTCGTTCGTCGTCGTTTAAGGAATTTTCCC 44239
Query 21951 AATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCT 22010
| || ||||| |||| ||| |||||||| | ||||| || ||| || |
Sbjct 44240 AGTCGCGATTATCTTGAGATAGATCGACTTCTTCGGCGGTCCAGAATGAAGCTTCGGCTT 44299
Query 22011 TTTTATACATAATCCAGATATCATTATATATTATTGGAAATAT 22053
|||| ||||| ||| || | | |||| ||||| || ||
Sbjct 44300 TTTTGTACATCTCCCATATCTGAGGATATTGGATTGGGAACAT 44342
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531848873184400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |