Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq422 140 3e-28 >seq422 Length=101449 Score = 140 bits (154), Expect = 3e-28 Identities = 567/883 (64%), Gaps = 26/883 (3%) Strand=Plus/Plus Query 21184 TTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGA 21243 ||| ||||| |||| |||||| || || || ||||| || || |||| | || || | Sbjct 43473 TTTCTGATACTCACCAACTCTCTTCTCAAAGAAATTAGTTTTACCTTGAAGCGAAATCAA 43532 Query 21244 TTCCATAAAATCAAATGGATTT-TCAGATTTAAATATTTTATTACAACCCAGTTCTGATA 21302 ||||| ||||||||||||| ||| | | | | ||| | || | || | Sbjct 43533 CTCCATCCAATCAAATGGATTACTCACACC-ATACACCTTACCGTACCCAGGCTCACCCA 43591 Query 21303 ATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCA 21362 |||| | ||| |||||||| || |||||||||| ||| || |||| ||||| || | || Sbjct 43592 ATAACCGATCCGCTACAAAATCAATATATTGACTCATCAAATCACGGTTCATCCCAACCA 43651 Query 21363 ATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTA 21422 | |||||| || | || ||| | | || || || || ||| || | Sbjct 43652 ACGCGCAAGGAAGCGCGTCGCACACAAACTCTCTCTCAATCTCAACCGCATCACGAACAA 43711 Query 21423 TATTTATTATCCTAGATGT--ACTAGGG--GGATACAATAATTGTTTAAACATCAAACAT 21478 | | ||| | ||| | |||| | | || || || | |||| ||||||| Sbjct 43712 T--TGATTTCACACGATCTTCACTAAGCTTGAATCGAAGAAGACTATAAA--TCAAACAA 43767 Query 21479 GCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCG 21538 || ||||||||||| | |||||| || || || | ||| || || || || | || Sbjct 43768 GCGAAATCACAATGAAGACCTTCGTCTCTTGAGATCAGTTCGTTGGAGAAAGTAAGTCCA 43827 Query 21539 GGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT-CCTGAAAAGAAAAT 21597 |||||||| |||| || || ||||| || || || |||| ||| || || ||||| || Sbjct 43828 GGCATTAAACCTCGTTTCTTCAACCAGAAAATAGA-ACAAAAGCTACCGGAGAAGAAGAT 43886 Query 21598 GCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCC-AATA 21656 || |||||| |||||| || || | ||||||| | | || || |||| | Sbjct 43887 ACCTTCAACGCAAGCAAAAGCCACGATTCGTTCAGC----GAAGCTTTGAGATCCGTCGA 43942 Query 21657 TCCATTTTTCTGCCCATTTTGCCTT-TTCTTTAATACAATCAATTGTATCAATAGCTTTT 21715 ||||||| ||||||| ||| || ||| || | |||| ||| || ||||| || Sbjct 43943 TCCATTTCATCGCCCATTGTGCTTTCTTCGTT-ACACAAGGAATGGTTTCAATTGCGCGG 44001 Query 21716 AAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATT 21775 || ||||||| | | || | ||| | || ||||||||| Sbjct 44002 AAGAGATGATCTCTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTATACATC 44061 Query 21776 TCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACAT 21835 ||||| || ||||| || ||||| || |||||||||||||| | ||||| || Sbjct 44062 TCAGAGTGAATATTCTCAATCGCGATTTGAAATCCGTAAAAGGCACGAGCCTCGGAGATC 44121 Query 21836 TGAACCTCGGAATAAAATC--GTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGG 21893 ||||| ||||| |||| ||||| | || || || || || || |||| Sbjct 44122 TGAACATCGGACATGAATCGGGTTGA--TAGATTCTCTAAAACGATGCCGTCTGATGCGG 44179 Query 21894 CAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTA---ATTTTTTCC 21950 | || || || | || | ||| || || | |||||||| || ||| | |||| || Sbjct 44180 CGAAGAAGGCGAGTACGTGTTTGATGAAGTGTCGTTCGTCGTCGTTTAAGGAATTTTCCC 44239 Query 21951 AATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCT 22010 | || ||||| |||| ||| |||||||| | ||||| || ||| || | Sbjct 44240 AGTCGCGATTATCTTGAGATAGATCGACTTCTTCGGCGGTCCAGAATGAAGCTTCGGCTT 44299 Query 22011 TTTTATACATAATCCAGATATCATTATATATTATTGGAAATAT 22053 |||| ||||| ||| || | | |||| ||||| || || Sbjct 44300 TTTTGTACATCTCCCATATCTGAGGATATTGGATTGGGAACAT 44342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531848873184400