Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq422 253 3e-62 seq144 145 1e-29 seq330 91.5 2e-13 seq1401 84.2 3e-11 >seq422 Length=101449 Score = 253 bits (280), Expect = 3e-62 Identities = 617/919 (67%), Gaps = 27/919 (3%) Strand=Plus/Plus Query 33012 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 33071 ||| || || ||||| || | || || || ||||||||||| |||| | || || Sbjct 43473 TTTCTGATACTCACCAACTCTCTTCTCAAAGAAATTAGTTTTACCTTGAAGCGAAATCAA 43532 Query 33072 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 33131 ||||| ||||||| ||||| | ||| ||| | || | || ||| | Sbjct 43533 CTCCATCCAATCAAATGGATTACTCACACCATACACCTTACCGTACCCAGGCTCACCCAA 43592 Query 33132 CAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAA- 33190 || | |||||| || || || |||||| |||||| |||| ||||| || | | Sbjct 43593 TAACCGATCCGCTACAAAATCAATATATTGACTCATCAAATCACGGTTCATCCCAACCAA 43652 Query 33191 -GTTTAACTGGAAGAGC--CGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTA 33247 | || ||||| || |||| | ||| ||| ||||| |||||||| | Sbjct 43653 CGCGCAA--GGAAGCGCGTCGCAC--ACAAACTCTCTCTCAATCTCAACCGCATCACGAA 43708 Query 33248 TAATAGATCTAACGGTTTCTTCACTCGG--TGGATGCAATAAATGTTTAAACATCAAACA 33305 ||| ||| | || |||||||| | || || || || | |||| ||||||| Sbjct 43709 CAATTGATTTCACACGATCTTCACTAAGCTTGAATCGAAGAAGACTATAAA--TCAAACA 43766 Query 33306 TGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCC 33365 |||||||| || || ||||| |||||||| || ||||||||||| || || ||||| Sbjct 43767 AGCGAAATCACAATGAAGACCTTCGTCTCTTGAGATCAGTTCGTTGGAGAAAGTAAGTCC 43826 Query 33366 GGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT-CCAGAAAAGAAGA 33424 ||||||| || || || || | ||| || || ||| | || | | || || ||||||| Sbjct 43827 AGGCATTAAACCTCGTTTCTTCAACCAGAAAATAGAA-CAAAAGCTACCGGAGAAGAAGA 43885 Query 33425 TTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCAT--GT-- 33480 | ||||| || |||||| || | | || || | | || || || || Sbjct 43886 TACCTTCAACGCAAGCAAAAGCCACGATTCGTTCAGCGAA----GCTTTGAGATCCGTCG 43941 Query 33481 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33540 ||||| || ||||| | || ||||| |||||||||| || ||||| || || Sbjct 43942 ATCCATTTCATCGCCCATTGTGCTTTCTTCGTTACACAAGGAATGGTTTCAATTGCGCGG 44001 Query 33541 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33600 ||||||| | | | || || ||||||| | ||||||||||| | ||||||||||| Sbjct 44002 AAGAGATGATCTCTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTATACATC 44061 Query 33601 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33660 || || ||||| || ||||| || || ||||||||||| || | |||||||| ||| Sbjct 44062 TCAGAGTGAATATTCTCAATCGCGATTTGAAATCCGTAAAAGGCACGAGCCTCGGAGATC 44121 Query 33661 TGTACTTCTGTACA-AAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGC 33719 || || || | ||| ||||| | | ||| || || || ||||| || || Sbjct 44122 TGAACATC-GGACATGAATCGGGTTGATAGATTCTCTAAAACGATGCCGTCTGATGCGGC 44180 Query 33720 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAG--TTTATTCCA 33776 || || || | ||| ||||| || || | | |||||| | || | || || | ||| Sbjct 44181 GAAGAAGGCGAGTACGTGTTTGATGAAGTGTCGTTCGTCGTCGTTTAAGGAATTTTCCCA 44240 Query 33777 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33836 || |||||| ||||| ||| |||||||| | ||||| ||||| || || || || Sbjct 44241 GTCGCGATTATCTTGAGATAGATCGACTTCTTCGGCGGTCCAGAATGAAGCTTCGGCTTT 44300 Query 33837 TTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATT 33896 ||| ||||| | ||| || | | ||||||||||||||| ||| |||| || |||| | Sbjct 44301 TTTGTACATCTCCCATATCTGAGGATATTGGATTGGGAACATACAGAATCGATCTGGAGT 44360 Query 33897 TGGTGCAAGGATGGGTTCC 33915 ||||| || || |||||| Sbjct 44361 TGGTGTTAGAATCGGTTCC 44379 >seq144 Length=115930 Score = 145 bits (160), Expect = 1e-29 Identities = 371/557 (67%), Gaps = 12/557 (2%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || |||||||||||||| | || ||||||| | || | |||||| || || || | Sbjct 56097 CAAGCGAAATCGCAGTGTAAGCCTTCGTCTCGAGAGATCAATTCGTTAGAGAAGGTTAAA 56038 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || ||||| || || || || |||||||| || ||||| ||| || || |||||| Sbjct 56037 CCAGGCATGAGTCCTCGTTTCTTAAGCCAGAAGATGGAGCAGAAGCTACCGGAGAAGAAG 55978 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCAT--GT- 33480 || ||||| || ||| || || | | || || | | | || || || Sbjct 55977 ATACCTTCAACGCAAGCGAAAGCTACGATTCGTTCAGCGAA----GGTTTGAGATCCGTC 55922 Query 33481 -ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33539 ||||| | ||||| | || ||||| || ||||| || ||||| || || Sbjct 55921 GATCCAAGTCATCGCCCACTGTGCTTTCTTCGCGACGCAAGGAATGGTTTCAATCGCGCG 55862 Query 33540 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33599 ||||||| | | | || || ||||||| | || ||||||| | ||||||||||| Sbjct 55861 GAAGAGATGATCTCTCTCTTTGTTATCTTTGATGTACGTATCGAGAAGGAGACTATACAT 55802 Query 33600 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33659 || |||||||| || ||||| || ||||| |||||||||||| | ||||| | | Sbjct 55801 CTCGGAATGAATATTCTCAATCGCGATCTGGAATCCGTAGAAAGCACGCGCCTCCGAGAC 55742 Query 33660 CTGTACTTCTGTACA-AAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTG 33718 || || |||| ||| |||||| || | ||| || || || ||||| || | Sbjct 55741 TTGAACATCTG-ACATGAATCGTGAAGCGAGATTCTCTAAAACGATACCGTCTGATGCGG 55683 Query 33719 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAGTTTATTCCAA 33777 | || || || | || ||||| || || | ||| | | || |||| || | |||| Sbjct 55682 CGAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCACCGTCGT-TTAGATTCTCCCAA 55624 Query 33778 TCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 33837 || |||| |||| ||| |||||||| | ||||| || ||||| || || || Sbjct 55623 TCGCGTCCGTCTTGTGATAGATCGACTTCTTCGGCGGTCCAGAACGATGCTTCGGCTTTC 55564 Query 33838 TTATACATGTTCCAGAT 33854 |||||||| | |||||| Sbjct 55563 TTATACATCTCCCAGAT 55547 >seq330 Length=201778 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 63611 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63670 |||||| | ||| || | ||||||| || || || |||||| || ||| | || || Sbjct 18415 AGTTCCGGAATTGAAGAGAGTAGGAGTTGCATGAGTGAACCATCGTTGAGACATTAAATG 18356 Query 63671 GTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 63729 ||| || | ||||| || || ||||| | ||| || || || || | || | ||| | Sbjct 18355 GTAAGTTTTGATAGCAGAATCAATATCTTCCTTG-TGGATGCCAACAGAAACCCTCATCA 18297 Query 63730 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63789 |||||| ||||| |||||||| | ||| | | ||| || | ||| ||| | || | Sbjct 18296 GCATGTGTTGAGGCCTTTCAACAACTTTGCCTTGGACTTTTAAGAGGTATGATCTCTCTA 18237 Query 63790 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838 |||||||||||||| || | |||| ||| || || || || || || Sbjct 18236 GCGTTTTAAAACCAAAGTAATCGTATTCAAAATCACGATCATAGATGAT 18188 >seq1401 Length=32814 Score = 84.2 bits (92), Expect = 3e-11 Identities = 91/118 (77%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 62702 GAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 62761 ||| ||||| || || |||| ||||| ||||||||||| |||||||| || | | | || Sbjct 18660 GAGGATAAATGCATCTGCTAGACCTTGCACACCAATACCAATAGGTCTGTGACGCATGTT 18601 Query 62762 AGAGATTTCAGCT-TCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 62818 || ||| ||| ||| | |||||| ||||| | ||||||||| ||||||||||| Sbjct 18600 TGAAGTTTTTGCTGTCTCCAC-AGGATAGTAATTCACATCTATAATCTTATTGAGATT 18544 Score = 82.4 bits (90), Expect = 1e-10 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430 |||||| || || | |||| ||| || | ||| | || | || |||||| | |||||| Sbjct 17342 TCCTCCTTGGTCAACATATCGAGCAGTATCGTTAAATACACGCAGCATTGGGACAATACC 17283 Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490 || || | ||||| || || || || |||||| | |||||||||||| || ||| Sbjct 17282 ATTAGAAGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGAATATTATGAACTGA 17223 Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550 | ||| || || || || ||| || | || || ||| | || ||||| || Sbjct 17222 AACACCAATACCACCAGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATAT 17163 Query 63551 ACCCTCTATGCTATCATCGATCATG 63575 ||||| ||||||||||| ||||| Sbjct 17162 GCCCTCAATGCTATCATCTTTCATG 17138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622886384779600