Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq1061 91.5 1e-13 seq2666 89.7 5e-13 seq863 82.4 7e-11 >seq1061 Length=128926 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/137 (76%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 |||||||| || ||||| || ||||||||||| || || | | || || ||||| || Sbjct 83112 GACAAAGAGGGTATACCACCTGATCAACAAAGGCTGATATTTGCTGGTAAGCAACTTGAG 83053 Query 26922 GATGATAGAAACGTCAGC-GACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||| | ||| ||| || || ||||| || ||||| |||||| | ||||| ||||| Sbjct 83052 GATGGCCG-AACTCTAGCTGATTACAACATCCAGAAAGAGTCTACTCTTCATCTTGTCCT 82994 Query 26981 GAGACTTAGAGGAGGAA 26997 ||| |||||||| |||| Sbjct 82993 GAGGCTTAGAGGTGGAA 82977 >seq2666 Length=20083 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| ||||| ||||||| ||| | || ||| | ||| | || Sbjct 9508 ATGCAGATTTTTGTGAAAACCCTAACTGGCAAAACCATAACCCTAGAAGTTGAGAGCTCT 9449 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||| | || | ||||| |||||| ||||||||||||||| | | || ||| Sbjct 9448 GACACCGTTGACAATGTCAAGGCCAAGATTCACGACAAAGAAGGGATCCAAGCAGACCAA 9389 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947 || ||||| || | || ||||| ||||| ||||||| | | || || |||||||| Sbjct 9388 CAGAGACTTATCTTCGCTGGCAAGCAACTTGAAGATGGT-CACACTCTTGCAGACTATAA 9330 Query 26948 CATTCAAAAAGAATCTAC 26965 ||| ||||| ||||| || Sbjct 9329 CATCCAAAAGGAATCAAC 9312 >seq863 Length=117140 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | || || ||||| |||| || || | |||||| | || | || || Sbjct 77864 AAGATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATCACCCTTGAGGTCGAGTCC 77805 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 ||||||||||| | |||||| ||||| ||||| || || || || || || Sbjct 77804 TCTGACACCATCGACAATGTCAAAGCGAAGATCCAAGACAAGGAGGGAATCCCACCGGAC 77745 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || || || | |||| || ||| ||||| |||||||| | | | || |||||| Sbjct 77744 CAGCAGCGATTGATTTTCGCCGGGAAACAGCTCGAAGACGGCCGTACTCTCGCCGACTAC 77685 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || ||||| || | |||||||| || Sbjct 77684 AACATCCAGAAGGAATCGACGCTTCATCTGGTGCT 77650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478615670583200