Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1401 120 8e-22 seq330 118 3e-21 seq422 111 4e-19 seq1002 105 2e-17 seq210 100 7e-16 seq144 91.5 4e-13 >seq1401 Length=32814 Score = 120 bits (132), Expect = 8e-22 Identities = 169/235 (72%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 363606 TTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAA 363665 ||||||||| | ||||| || ||| ||| ||||| || | ||| ||||| || | Sbjct 17123 TTGCTTTCTGATCTGCATGAAAGATGATAGCATTGAGGGCATATATGAAACACTCAAAGA 17182 Query 363666 TTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC 363725 |||||| |||| ||| ||| || || |||||||| || | || ||| ||||||| Sbjct 17183 GTGTGCTGTTATAAGCAAATCTGCTGGTGGTATTGGTGTTTCAGTTCATAATATTCGTGC 17242 Query 363726 A-CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTC 363784 | | | | ||||||||||| |||||| ||| || ||||| | || || ||||| | Sbjct 17243 AACTGGA-AGTTACATTCGTGGCACAAATGGAACTTCTAATGGTATTGTCCCAATGCTGC 17301 Query 363785 GTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 |||| ||| || ||||||| | || || ||||| || ||||| ||| | ||||| Sbjct 17302 GTGTATTTAACGATACTGCTCGATATGTTGACCAAGGAGGAGGCAAGAGAAAAGG 17356 >seq330 Length=201778 Score = 118 bits (130), Expect = 3e-21 Identities = 168/234 (72%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 |||||||| || |||||||| ||| |||||||||||| | ||||||| | || || Sbjct 18524 TGCTTTCTGATATGCATGAAGGATGATAGCATCGAGGGTATATATGACACATTGAAAGAT 18583 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 |||||| |||| || || || || |||||||| || ||||||| |||||||| Sbjct 18584 TGTGCTGTTATAAGCAGATCAGCCGGGGGTATTGGTGTTTCAGTCCACAACATTCGTGCA 18643 Query 363727 -CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCG 363785 | | | ||||||||||| ||||| |||| || ||||| | ||||| ||||| || Sbjct 18644 GCTGGA-AGTTACATTCGTGGCACTAATGGATCATCTAATGGAATTGTTCCAATGCTGCG 18702 Query 363786 TGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 || || | |||||| | || || ||||| || |||| ||| | ||||| Sbjct 18703 AGTATTCAATGATACTGTTCGTTATGTTGACCAAGGAGGAGCCAAGAGAAAAGG 18756 >seq422 Length=101449 Score = 111 bits (122), Expect = 4e-19 Identities = 358/543 (66%), Gaps = 17/543 (3%) Strand=Plus/Minus Query 22405 TTCCGCGCGATTCGCACCATTCAATCAATTAAGAATAAGGCAGATTGGGCGCTGAAATGG 22464 |||||||| ||| ||||||| | | | ||| || ||| | |||||| |||||||| Sbjct 44003 TTCCGCGCAATTGAAACCATTCCTTGTGTAACGAAGAAAGCACAATGGGCGATGAAATGG 43944 Query 22465 ATGAACAATGAACGTTCA----TTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGG 22520 || || || | ||| ||||| ||||| | | || |||||| |||||||| Sbjct 43943 ATCGACG--GATC--TCAAAGCTTCGCTGAACGAATCGTGGCTTTTGCTTGCGTTGAAGG 43888 Query 22521 CATTTTCTTTTCTGG-AGCATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGC 22579 || ||||| || || ||| |||||| | || || ||| | || ||||| | | |||| Sbjct 43887 TATCTTCTTCTCCGGTAGC-TTTTGTTCTATTTTCTGGTTGAAGAAACGAGGTTTAATGC 43829 Query 22580 CGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTG 22639 | || || || || || || || | || |||| || ||||||||| ||||| | Sbjct 43828 CTGGACTTACTTTCTCCAACGAACTGATCTCAAGAGACGAAGGTCTTCATTGTGATTTCG 43769 Query 22640 CGTGTATGCTATATCGGAATCATATCATTCATAAACTTCCATATGAAACTGT-ACTTGAT 22698 | ||| || | ||| | || | ||||| | ||| | || ||| | | | Sbjct 43768 CTTGTTTGATTTATAGTCTTCTTCG-ATTCA--AGCTTAGTGAAGATCGTGTGAAATCA- 43713 Query 22699 ATTATTACAAATGCAGTTGAACTTGAACGTCTATTTATTTGCGAGGCGTTACCA-GTAAG 22757 ||| || |||| ||||| |||| | ||| | ||||| ||| | || | | Sbjct 43712 ATTGTTCGTGATGCGGTTGAGATTGAGAGAGAGTTTGTGTGCGACGCGCTTCCTTGCGCG 43653 Query 22758 TCTCATTGGTATCAATGCCGAATCAATGAGTACATATATTAAATTTGTTGCAGATCGTCT 22817 | | |||| || || || | |||||| ||||||| | ||||| || ||||| | Sbjct 43652 T-TGGTTGGGATGAACCGTGATTTGATGAGTCAATATATTGATTTTGTAGCGGATCGGTT 43594 Query 22818 ATTAATTTCACTCGGTTATGCAAAGCATTATAACGTCGTTAATCCATTTGAATGGATGGA 22877 ||| | | || || | ||| ||| || |||||||||||| |||||||| Sbjct 43593 ATTGGGTGAGCCTGGGTACGGTAAGGTGTATGGTGTGAGTAATCCATTTGATTGGATGGA 43534 Query 22878 ACTTATTTCACTTGAAGGAAAGACCAATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAA 22937 | ||||| ||| |||| || || |||||||| || || ||||||||||| || || || Sbjct 43533 GTTGATTTCGCTTCAAGGTAAAACTAATTTCTTTGAGAAGAGAGTTGGTGAGTATCAGAA 43474 Query 22938 AGC 22940 ||| Sbjct 43473 AGC 43471 >seq1002 Length=111223 Score = 105 bits (116), Expect = 2e-17 Identities = 165/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 111592 ATGTCATTGATCAAATTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGA 111651 |||| ||| | | || |||||||| || | ||| || ||||| ||| || |||| Sbjct 95934 ATGTAATTAACAAGATCAAGAACAATCCTGATGATCGACGAATTATAATGTCAGCTTGGA 95993 Query 111652 ACCCAAATGCATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTAT 111710 |||| || | | ||||||||||| ||||| || | | | ||| ||||| ||| Sbjct 95994 ACCCTCCTGATCTTAAGCTGATGGCACTTCCTCCATGCCA-CATGTTTGCACAGTTCTAT 96052 Query 111711 GTACACGACGGGATG-CTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGG 111769 || ||| ||| |||||||| |||||||||||||| || |||||||| ||||| || Sbjct 96053 GTTG-CGAATGGAGAACTTTCATGTCAAATGTATCAGCGCTCAGCTGATATGGGTCTCGG 96111 Query 111770 TGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCA 111820 ||| ||||||| ||||| ||| | || ||||| ||| | ||||||| Sbjct 96112 TGTAACGTTTAACATTGCCTCATACTCCCTTCTTACATGCATTCTCGCTCA 96162 >seq210 Length=153681 Score = 100 bits (110), Expect = 7e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 111702 CAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATT 111761 ||||||||||| || || || ||||| |||||||||||||| || || || || Sbjct 139648 CAGTTTTATGTGGCAGAAGGAGAACTCTCATGTCAAATGTATCAGCGTTCAGCGGACATG 139707 Query 111762 GGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCAT 111821 || |||||||| |||||||| ||||| ||| | || |||||||| | ||||||| Sbjct 139708 GGCCTTGGTGTACCGTTTAACATTGCTTCCTACTCTCTTCTTACTTGTATGCTCGCTCAC 139767 Query 111822 TTTACAAATCTCAAACCGGGTGAATTCATTCACGTTATCGGAGATGCGCATGTTTACACA 111881 | |||| || ||||| || || || ||||| || ||||| ||||| |||| | Sbjct 139768 GTGTGTGATCTTGTTCCTGGTGATTTTATCCATGTTATTGGGGATGCTCATGTGTACAAA 139827 Query 111882 AACCA 111886 || || Sbjct 139828 AATCA 139832 >seq144 Length=115930 Score = 91.5 bits (100), Expect = 4e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 22783 ATGAGTACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAG 22842 |||||| |||||| | |||||||| ||| | || || | | || || || | ||| Sbjct 56234 ATGAGTCAGTATATTGAGTTTGTTGCGGATAGACTTTTGGGTGCGCTTGGGTACGGTAAG 56293 Query 22843 CATTATAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACC 22902 || || |||||| ||||| |||||||||||||| || ||| | || || || Sbjct 56294 GTGTACGGTGTGACTAATCCGTTTGATTGGATGGAACTTATCTCGCTTCAGGGTAAAACG 56353 Query 22903 AATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGC 22940 || |||||||| ||| | |||||||| ||||||||||| Sbjct 56354 AACTTCTTCGAGAAACGTGTTGGTGATTACCAAAAAGC 56391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303223179107420