Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq2666 107 2e-18 seq308 107 2e-18 seq863 91.5 1e-13 seq683 91.5 1e-13 >seq2666 Length=20083 Score = 107 bits (118), Expect = 2e-18 Identities = 149/205 (73%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| ||||||| ||| | || ||| | ||||| ||| | Sbjct 9508 ATGCAGATTTTTGTGAAAACCCTAACTGGCAAAACCATAACCCTAGAAGTTGAGAGCTCT 9449 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||| | || | ||||| |||||| |||||||||||| || | | || ||| Sbjct 9448 GACACCGTTGACAATGTCAAGGCCAAGATTCACGACAAAGAAGGGATCCAAGCAGACCAA 9389 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT-GACAGAAACGT-CAGCGATTATA 24168 |||||||| || | || ||||||||||| |||||| | || | | | || || |||| Sbjct 9388 CAGAGACTTATCTTCGCTGGCAAGCAACTTGAAGATGGTCACACTCTTGCA--GACTATA 9331 Query 24169 ACATTCAAAAAGAATCTACAATTCA 24193 |||| ||||| ||||| ||| |||| Sbjct 9330 ACATCCAAAAGGAATCAACACTTCA 9306 >seq308 Length=205501 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| | ||||| ||| | |||||| | ||||| ||| | Sbjct 131391 ATGCAAATATTTGTGAAAACCCTCACTGGCAAAACCATTACCCTAGAAGTTGAGAGCTCT 131332 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||| | || | || ||| |||||| ||||| ||||| || ||||| || ||| Sbjct 131331 GACACCGTTGACAATGTTAAAGCTAAGATTCAAGACAAGGAAGGAATCCCTCCGGACCAA 131272 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||||| || | | || || || || || |||| | | | |||||| ||| Sbjct 131271 CAGAGACTCATCTTTGCTGGTAAACAGCTTGAGGATGGTCGCACTCTTGCCGATTACAAC 131212 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || |||||||| || ||||||| ||| | | |||||||||| Sbjct 131211 ATCCAGAAAGAATCAACCCTTCATTTGGTGCTTCGTCTGAGAGGAGG 131165 >seq863 Length=117140 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | || || ||||| |||| || || | || ||| | || |||||| || Sbjct 77864 AAGATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATCACCCTTGAGGTCGAGTCC 77805 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 ||||||||||| | |||||| ||||| ||||| || || || || || || Sbjct 77804 TCTGACACCATCGACAATGTCAAAGCGAAGATCCAAGACAAGGAGGGAATCCCACCGGAC 77745 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||| || |||||| || ||| || || |||||||| | | | | || ||| || Sbjct 77744 CAGCAGCGATTGATTTTCGCCGGGAAACAGCTCGAAGACGGCCGTACTCTCGCCGACTAC 77685 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTG 24200 ||||| || || ||||| || ||||| | ||| Sbjct 77684 AACATCCAGAAGGAATCGACGCTTCATCTGGTG 77652 >seq683 Length=32930 Score = 91.5 bits (100), Expect = 1e-13 Identities = 109/144 (76%), Gaps = 3/144 (2%) Strand=Plus/Plus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 |||||||| || ||||| || ||||||||||| |||| | | || || ||| | ||| Sbjct 24508 GACAAAGAGGGGATACCACCAGATCAACAGAGGTTGATATTTGCTGGTAAACAATTAGAA 24567 Query 24144 GATGACAGAAACGTCAGC-GATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 |||| | ||| | ||| ||||| |||||||| ||||| ||||||||||| || || || Sbjct 24568 GATGGTCG-AACTTTAGCTGATTACAACATTCAGAAAGAGTCTACAATTCACTTGGTTTT 24626 Query 24203 AAGATTGAGAGG-AGGACTATAAT 24225 || | ||||| ||||||| || Sbjct 24627 GAGGCTTAGAGGTGGGACTATGAT 24650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429895076810550