Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq308 107 2e-18 seq275 91.5 1e-13 seq3586 87.8 1e-12 seq2666 87.8 1e-12 seq863 84.2 2e-11 >seq308 Length=205501 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| ||| | || |||| ||||| || |||||||| || |||||||| || || Sbjct 130709 CCACCTCTTAGACGAAGGACCAAGTGCAGGGTTGACTCCTTCTGGATGTTGTAATCAGCA 130768 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||| | ||||| || || | || || | |||||||||| ||| Sbjct 130769 AGAGTTCGACCATCCTCAAGCTGTTTACCAGCGAAGATGAGTCTCTGTTGGTCCGGAGGG 130828 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | || || ||||| |||| |||||| | | | || ||||| | |||| | Sbjct 130829 ATCCCTTCCTTGTCTTGGATTTTTGTCTTCACATTGTCGACTGTGTCCGAGCTCTCCACT 130888 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || |||||||||||||| || || || |||||||||||||| Sbjct 130889 TCCAAAGTTATGGTTTTTCCGGTAAGGGTCTTAACAAAAATCTGCAT 130935 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || ||||| ||||| ||||||||||| || | || | ||||| | || Sbjct 130505 TGAAGAGTCGACTCTTTTTGGATGTTGTAGTCTGCAAGAGTACGACCATCCTCAAGCTGC 130564 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAA--TTT 16850 || || ||| | || || | ||||||||| || | || |||||||| || ||| Sbjct 130565 TTACCAGCAAAGATGAGTCTCTGTTGGTCTGGTGGGATCCCTTCTTTGTCTTGAATCTTT 130624 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || |||||| | | |||||||| | ||| |||| || ||||||||||||| Sbjct 130625 GC--CTTCACATTATCTACAGTGTCTGAGCTCTCAACCTCCAAAGTTATGGTTTTTCCGG 130682 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 | || || ||||||||||||||||| Sbjct 130683 TTAGGGTCTTGACAAAAATCTGCAT 130707 >seq275 Length=143682 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/230 (70%), Gaps = 5/230 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || ||||| || |||| ||||| || ||||||||||| ||||||||||| ||| Sbjct 123901 CCACCACGGAGCCTGAGGACCAAGTGCAGAGTCGACTCCTTTTGGATGTTGTAGTCAGCC 123842 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | ||||| | ||||| || || | || || ||||| |||||| ||| Sbjct 123841 AATGTGCGACCATCCTCAAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGG 123782 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || || ||||| || || || ||| || | | | | ||||| | ||| Sbjct 123781 ATACCTTCCTTGTCCTGGATCTTGGC--CTTGACGTTGTCGATGGTGTCAGAGCTCTCAA 123724 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTC-AGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| ||||||||| || || || || || |||||||| Sbjct 123723 CCTCAAGGGTGATGGTCTTTCCGGTCAAGAGTCTTCACGAAGATCTGCAT 123674 >seq3586 Length=17470 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || |||||||||||||| ||||||||||| || | || | ||| Sbjct 5748 AGAACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGCGAGTGTGCGACCATCC 5689 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | || || || ||| | ||||| | ||| || ||| ||| | || || ||||| Sbjct 5688 TCAAGCTGCTTACCGGCAAAGATAAGTCTCTGCTGATCCGGAGGGATACCTTCCTTGTCC 5629 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | |||||| | ||| |||| ||||||| Sbjct 5628 TGGATCTTAGC--CTTGACATTATCAATAGTGTCAGAGCTCTCGACCTCCAAAGTGATGG 5571 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||| || || |||||||| |||||||| Sbjct 5570 TTTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 5537 >seq2666 Length=20083 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || || |||||||| ||||| ||||| || | || | | || || | ||| Sbjct 9306 TGAAGTGTTGATTCCTTTTGGATGTTATAGTCTGCAAGAGTGTGACCATCTTCAAGTTGC 9365 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| || | ||||| | ||||||||| | | | || ||||||||| ||| | Sbjct 9366 TTGCCAGCGAAGATAAGTCTCTGTTGGTCTGCTTGGATCCCTTCTTTGTCGTGAATCTTG 9425 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 ||| || | | | || ||||| | ||| ||| | ||| |||||||| || || Sbjct 9426 GCCTTGACATTGTCAACGGTGTCAGAGCTCTCAACTTCTAGGGTTATGGTTTTGCCAGTT 9485 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || ||||| |||||||||||||| Sbjct 9486 AGGGTTTTCACAAAAATCTGCAT 9508 >seq863 Length=117140 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/217 (69%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| ||||| || ||||| || |||||||||||||| | || | |||| Sbjct 77650 AGCACCAGATGAAGCGTCGATTCCTTCTGGATGTTGTAGTCGGCGAGAGTACGGCCGTCT 77709 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | ||||| || || |||| | ||||| |||||| || | ||||| ||||| Sbjct 77710 TCGAGCTGTTTCCCGGCGAAAATCAATCGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCT 77769 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || ||| || || | | | | ||||| || ||| || | |||||||| Sbjct 77770 TGGATCTTCGCT--TTGACATTGTCGATGGTGTCAGAGGACTCGACCTCAAGGGTGATGG 77827 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 | || || || || ||||| || || |||||||| || Sbjct 77828 TCTTACCCGTTAGGGTTTTCACGAAGATCTGCATCTT 77864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405049441951900