Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq285 127 1e-24 seq1 109 4e-19 seq275 107 1e-18 seq516 105 4e-18 seq308 104 2e-17 seq3586 98.7 7e-16 seq2666 82.4 5e-11 seq683 82.4 5e-11 >seq285 Length=93944 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| | || || |||||||| Sbjct 21588 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAAGGACAGTGGGAATCTCGT 21647 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 21648 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 21682 >seq1 Length=111110 Score = 109 bits (120), Expect = 4e-19 Identities = 164/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 ||| ||||||| ||| | |||||||||||| || ||| || || || |||||||| | Sbjct 60648 ACCTCCTCTCAGACGGAGCACCAAATGAAGCGTCGACTCTTTCTGGATGTTGTAATCGGC 60589 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 | | | |||| || | ||| || ||||| || || || || || ||||| | || Sbjct 60588 GAGTGTCCTTCCGTCTTCCAGTTGCTTCCCGGCGAAGATCAGACGCTGCTGATCCGGTGG 60529 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 || ||||| ||||| || || ||||||||| | || || || |||||| Sbjct 60528 GATTCCTTCCTTGTCTTGGATCTTCGCCTTCACATTGTCGATTGTGTCCGATGATTCAAC 60469 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTT 38322 |||| || || || || ||||| | |||||||||||| |||||||| |||| Sbjct 60468 CTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTTTTT 60416 >seq275 Length=143682 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | |||||| ||||||||||| || |||||| || || ||||| |||| Sbjct 139556 TACCACCACGTAGACGCAAGACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAGTCAG 139497 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| ||| |||| || | ||| |||||||| || || | | || || || | | Sbjct 139496 CCAAAGTACGGCCGTCCTCAAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGTG 139437 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || || ||||| ||||| ||||| || | || || || ||| || | Sbjct 139436 GGATTCCCTCCTTGTCTTGGATTTTAGCTTTCACGTTGTCGATGGTGTCAGAACTCTCCA 139377 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || || ||||| || || |||||||| || ||||| || ||||| Sbjct 139376 CCTCCAAAGTGATAGTCTTTCCGGTCAAGGTCTTAACGAAGATTTGCAT 139328 Score = 89.7 bits (98), Expect = 3e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| || | | |||||| ||||| ||||| || |||||| |||||||||||||| | Sbjct 123446 TACCTCCACGAAGACGCAAGACCAAGTGAAGGGTTGACTCCTTCTGAATATTGTAATCGG 123387 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| ||| | || || | || |||||||| || || | | || || || | | Sbjct 123386 CCAAGGTACGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGTG 123327 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || |||||||| || || ||||| || | | || || || || | Sbjct 123326 GGATACCCTCTTTGTCTTGGATCTTGGCTTTCACGTTGTCAATGGTGTCGGAGCTCTCCA 123267 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | ||||| || ||||| |||||||| || ||||| |||||||| Sbjct 123266 CCTCGAGGGTAATGGTCTTACCAGTCAAGGTCTTGACGAAGATCTGCAT 123218 Score = 89.7 bits (98), Expect = 3e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| || | | |||||| ||||||||||| || |||||| || ||||||||||| | Sbjct 139784 TACCTCCACGAAGACGCAAGACCAAATGAAGGGTTGACTCCTTCTGGATATTGTAATCGG 139725 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| ||| | || || | || |||||||| || || | | || || || | | Sbjct 139724 CCAAGGTACGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGTG 139665 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || |||||||| || || ||||| || | | || || || || | Sbjct 139664 GGATACCCTCTTTGTCTTGGATCTTGGCTTTCACGTTGTCAATGGTGTCAGAGCTCTCCA 139605 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | ||||| || ||||| |||||||| || ||||| |||||||| Sbjct 139604 CCTCGAGGGTAATGGTCTTACCAGTCAAGGTCTTGACGAAGATCTGCAT 139556 >seq516 Length=37039 Score = 105 bits (116), Expect = 4e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 ||||| || |||||| ||||| |||||||||| | | || | || || | || Sbjct 10242 TGAAGTGTTGACTCCTTCTGAATGTTGTAATCAGCAAGAGTGCGACCATCTTCGAGCTGC 10301 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || ||||| ||||| || | |||||| || | |||| ||||| ||||| || || Sbjct 10302 TTGCCGGCGAATATGAGTCTTTGTTGGTCTGGTGGGATCCCTTCCTTGTCTTGGATCTTG 10361 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 ||||||||| | | |||||| |||||||| || || || || |||||||| || Sbjct 10362 GCCTTCACATTGTCAATGGTATCTGAGCTTTCAACCTCCAAAGTTATGGTTTTACCGGTA 10421 Query 38295 AAGGTTTTCACGAATATCTGCAT 38317 | ||| || |||||||||||||| Sbjct 10422 AGGGTCTTGACGAATATCTGCAT 10444 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | ||||| ||| | ||||| || |||||||| || ||||| || | Sbjct 9990 CCACCACGAAGACGCAGCACAAGGTGAAGTGTTGATTCCTTTTGGATGTTGTAGTCTGCA 10049 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | ||| | || || | || || || ||||| || || | |||||| || | ||| Sbjct 10050 AGAGTACGACCATCCTCAAGCTGCTTACCAGCAAAGATGAGTCTTTGTTGGTCTGGTGGG 10109 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||||||||| ||| ||| ||| ||||| | | || ||| || ||||| Sbjct 10110 ATCCCTTCTTTGTCTTGAATCTTTGCCTTTACATTATCTATTGTGTCTGAGCTCTCAACC 10169 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || || || || ||||| || || | ||||||||| || ||||||||| Sbjct 10170 TCCAAAGTTATGGTTTTGCCAGTTAGGGTTTTCACAAAAATCTGCATG 10217 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | ||| | || | ||||||||| ||| ||||| || |||||||| | Sbjct 9762 CCACCGCGGAGACGGAGAACAAGATGAAGAGTCGACTCTTTTTGGATGTTGTAATCCGCT 9821 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 |||| || | || |||| || || || ||||| || || | || || || | || Sbjct 9822 AAAATGCGACCATCTTCTAGCTGCTTCCCCGCAAAGATAAGCCTCTGCTGGTCCGGTTGG 9881 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||||||||| ||| ||| ||| ||||| | || ||||| ||| || || Sbjct 9882 ATCCCTTCTTTGTCATGAATCTTTGCCTTGACATTGTCAACCGTATCAGAACTCTCGACC 9941 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | | || || || |||||||| || || || || |||||||| Sbjct 9942 TCAAGAATGATGGTCTTGCCCGTCAAAGTCTTGACAAAAATCTGCAT 9988 >seq308 Length=205501 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| ||||||| ||| | |||||||||||| || || || || || |||||||| | Sbjct 131163 TACCTCCTCTCAGACGAAGCACCAAATGAAGGGTTGATTCTTTCTGGATGTTGTAATCGG 131222 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | || | || || | ||||| || ||||| || || | ||||| || | | Sbjct 131223 CAAGAGTGCGACCATCCTCAAGCTGTTTACCAGCAAAGATGAGTCTCTGTTGGTCCGGAG 131282 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||| ||||| ||| || || ||||| | || || || || |||| Sbjct 131283 GGATTCCTTCCTTGTCTTGAATCTTAGCTTTAACATTGTCAACGGTGTCAGAGCTCTCAA 131342 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 |||||| ||||| ||||| || || | ||||||||| ||||| |||||| Sbjct 131343 CTTCTAGGGTAATGGTTTTGCCAGTGAGGGTTTTCACAAATATTTGCATG 131392 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 |||||||| ||| ||||| || ||||| || | | | ||| | || || | || Sbjct 130505 TGAAGAGTCGACTCTTTTTGGATGTTGTAGTCTGCAAGAGTACGACCATCCTCAAGCTGC 130564 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || || ||||| || || | ||||| || | |||| ||||||||||| ||| ||| Sbjct 130565 TTACCAGCAAAGATGAGTCTCTGTTGGTCTGGTGGGATCCCTTCTTTGTCTTGAATCTTT 130624 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 ||||||||| | ||||| ||| || ||||| || || || || ||||| || || Sbjct 130625 GCCTTCACATTATCTACAGTGTCTGAGCTCTCAACCTCCAAAGTTATGGTTTTTCCGGTT 130684 Query 38295 AAGGTTTTCACGAATATCTGCATG 38318 | ||| || || || ||||||||| Sbjct 130685 AGGGTCTTGACAAAAATCTGCATG 130708 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 || ||| | ||| || || |||||| ||||| |||||||||| | || | || Sbjct 130951 CAGCACAAGATGGAGGGTTGACTCCTTCTGAATGTTGTAATCAGCAAGTGTGCGACCATC 131010 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | || || ||||| ||||| || | ||||| || | | || ||||| ||||| Sbjct 131011 TTCGAGCTGCTTGCCGGCGAATATGAGTCTCTGTTGGTCTGGTGAGATCCCTTCCTTGTC 131070 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 || || ||| ||||| | || |||||| |||||||| || || || || || Sbjct 131071 TTGGATCTTGGCCTTTACATTGTCAACGGTATCTGAGCTTTCAACCTCCAAAGTTATGGT 131130 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||||| || | ||| || |||||||||||||| Sbjct 131131 TTTACCGGTAAGGGTCTTGACGAATATCTGCAT 131163 >seq3586 Length=17470 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 |||||||||| ||| | ||||||||||||||| ||||||||| || ||||| |||| Sbjct 5763 CCACCTCTCAGACGAAGAACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGCG 5704 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || | || || | || || |||||||| || || | || ||||| | ||| Sbjct 5703 AGTGTGCGACCATCCTCAAGCTGCTTACCGGCAAAGATAAGTCTCTGCTGATCCGGAGGG 5644 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||| |||||| || || ||| ||||| | | ||| || || || || Sbjct 5643 ATACCTTCCTTGTCCTGGATCTTAGCCTTGACATTATCAATAGTGTCAGAGCTCTCGACC 5584 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || || ||||| || || | ||| || || || |||||||| Sbjct 5583 TCCAAAGTGATGGTTTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 5537 Score = 89.7 bits (98), Expect = 3e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||| || || | ||||| || || || || || || || |||||||| | Sbjct 5537 TACCACCTCTTAATCGGAGAACCAAGTGGAGGGTTGATTCTTTCTGGATGTTGTAATCGG 5478 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| ||| | || |||| ||||||||||| || || | | ||| ||||| | | Sbjct 5477 CCAAGGTACGGCCATCTTCTAGCTGTTTTCCGGCGAAGATCAACCTTTGCTGATCCGGAG 5418 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||| || ||| ||| ||| ||| ||||| | || ||||| || || | Sbjct 5417 GAATGCCTTCCTTATCCTGAATCTTTGCCTTAACATTGTCGATGGTATCAGAGCTCTCGA 5358 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || || || || || || | ||||||||||| | ||||| Sbjct 5357 CATCGAGAGTGATGGTCTTGCCAGTGAGTGTTTTCACGAAAACTTGCAT 5309 >seq2666 Length=20083 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||||| | ||||||||| | |||||| || | | || || ||||||||||| | Sbjct 9510 CCACCTCGAAGACGCAACACAAGATGAAGTGTTGACCCTTTCTGTATATTGTAATCCGCA 9569 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | ||| | || || | ||| || || || || || || | |||||| || | ||| Sbjct 9570 AGAGTACGACCATCCTCAAGTTGCTTGCCAGCGAAGATAAGTCTTTGTTGGTCCGGAGGG 9629 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 || ||| |||| || || ||| ||| | || | ||||| || ||||||||| Sbjct 9630 ACTCCTGCTTTATCTTGGATCTTTATCTTGATGTTATCAACAGTGTCGGAGCTTTCAACT 9689 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | | || || || || || | || |||||||| || |||||| Sbjct 9690 TCAAGAGCTATGGTCTTGCCTGTAAGAGTCTTCACGAAGATTTGCATG 9737 >seq683 Length=32930 Score = 82.4 bits (90), Expect = 5e-11 Identities = 110/151 (73%), Gaps = 3/151 (2%) Strand=Plus/Minus Query 38083 AATCAT--TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATT 38140 |||||| | |||||||| | | ||| ||||| |||| || ||| || ||||| || Sbjct 24651 AATCATAGTCCCACCTCTAAGCCTCAAAACCAAGTGAATTGTAGACTCTTTCTGAATGTT 24592 Query 38141 GTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTG 38200 |||||||| ||| || | || ||||||||||| || |||||||| | | ||||| Sbjct 24591 GTAATCAGCTAAAGTTCGACCATCTTCTAATTGTTTACCAGCAAATATCAACCTCTGTTG 24532 Query 38201 ATCGGAGGGGACGCCTTCTTTGTCCATAATT 38231 ||| | || | || ||||||||| ||||| Sbjct 24531 ATCTGGTGGTATCCCCTCTTTGTCC-TAATT 24502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334915318260110