Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq422 228 1e-54 seq144 145 1e-29 seq330 95.1 2e-14 seq1401 91.5 2e-13 >seq422 Length=101449 Score = 228 bits (252), Expect = 1e-54 Identities = 609/917 (66%), Gaps = 23/917 (3%) Strand=Plus/Plus Query 32369 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 32428 ||| || || ||||| || | || || || |||||||||||||||| | || || Sbjct 43473 TTTCTGATACTCACCAACTCTCTTCTCAAAGAAATTAGTTTTACCTTGAAGCGAAATCAA 43532 Query 32429 TTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 32488 ||||| |||| |||||||| | ||| ||| | || | || ||| | Sbjct 43533 CTCCATCCAATCAAATGGATTACTCACACCATACACCTTACCGTACCCAGGCTCACCCAA 43592 Query 32489 CAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAA- 32547 || | ||| || ||||| || |||||| |||||| |||| ||||| || | | Sbjct 43593 TAACCGATCCGCTACAAAATCAATATATTGACTCATCAAATCACGGTTCATCCCAACCAA 43652 Query 32548 -GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATA 32606 | || ||||| || | | ||| ||| ||||| ||||| || | | Sbjct 43653 CGCGCAA--GGAAGCGCGTCGCACACAAACTCTCTCTCAATCTCAACCGCATCACGAACA 43710 Query 32607 ATAGATCTTACTGTTTCTTCACTCGG--TGGATACAATAAATGTTTAAACATCAAACATG 32664 || ||| | || |||||||| | || || || || | |||| ||||||| | Sbjct 43711 ATTGATTTCACACGATCTTCACTAAGCTTGAATCGAAGAAGACTATAAA--TCAAACAAG 43768 Query 32665 CGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGG 32724 ||||||| || || ||||| |||||||| || | ||||||||| || || ||||| | Sbjct 43769 CGAAATCACAATGAAGACCTTCGTCTCTTGAGATCAGTTCGTTGGAGAAAGTAAGTCCAG 43828 Query 32725 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAAAATT 32783 |||||| || || || || | ||| || || || |||| | | || || ||||| || Sbjct 43829 GCATTAAACCTCGTTTCTTCAACCAGAAAATAGAA-CAAAAGCTACCGGAGAAGAAGATA 43887 Query 32784 CCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCAT--GT--AT 32839 ||||| || ||||| || | | || || | | || || || || || Sbjct 43888 CCTTCAACGCAAGCAAAAGCCACGATTCGTTCAGCGAA----GCTTTGAGATCCGTCGAT 43943 Query 32840 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 32899 ||| || ||||| | || ||||| |||||||||| || || || || || || Sbjct 43944 CCATTTCATCGCCCATTGTGCTTTCTTCGTTACACAAGGAATGGTTTCAATTGCGCGGAA 44003 Query 32900 GAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTC 32959 ||||| | | | || || ||||||| | ||| ||||| | | ||||||||||| || Sbjct 44004 GAGATGATCTCTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTATACATCTC 44063 Query 32960 CGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTG 33019 || ||||| || ||||| || |||||||||||||| ||| | |||||||| ||||| Sbjct 44064 AGAGTGAATATTCTCAATCGCGATTTGAAATCCGTAAAAGGCACGAGCCTCGGAGATCTG 44123 Query 33020 TACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAA 33078 || || | ||| ||||| || || ||| || || || ||||| || || | Sbjct 44124 AACATC-GGACATGAATCGGGTTGATAGATTCTCTAAAACGATGCCGTCTGATGCGGCGA 44182 Query 33079 AAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAG--TTTATTCCAAT 33135 | || || | ||| ||||| || || | | |||||| | || | || || | ||| | Sbjct 44183 AGAAGGCGAGTACGTGTTTGATGAAGTGTCGTTCGTCGTCGTTTAAGGAATTTTCCCAGT 44242 Query 33136 CATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTT 33195 | |||||| ||||| ||| |||||||| | ||||| ||||| || || || |||| Sbjct 44243 CGCGATTATCTTGAGATAGATCGACTTCTTCGGCGGTCCAGAATGAAGCTTCGGCTTTTT 44302 Query 33196 TATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTT 33255 | ||||| | ||| || | | ||||||| ||||| || ||| |||| || |||| || Sbjct 44303 TGTACATCTCCCATATCTGAGGATATTGGATTGGGAACATACAGAATCGATCTGGAGTTG 44362 Query 33256 TTGCAAGGATTGGTTCC 33272 || || || |||||| Sbjct 44363 GTGTTAGAATCGGTTCC 44379 >seq144 Length=115930 Score = 145 bits (160), Expect = 1e-29 Identities = 395/592 (67%), Gaps = 16/592 (3%) Strand=Plus/Minus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || |||||||||||||||| || ||||||| | || |||||||| || || || | Sbjct 56097 CAAGCGAAATCGCAGTGTAAGCCTTCGTCTCGAGAGATCAATTCGTTAGAGAAGGTTAAA 56038 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 32779 || ||||| || || || || |||||||| || ||||| ||| | | | || || ||||| Sbjct 56037 CCAGGCATGAGTCCTCGTTTCTTAAGCCAGAAGATGGA-GCAGAAGCTACCGGAGAAGAA 55979 Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCAT--GT 32837 || ||||| || || || || | | || || | | | || || || Sbjct 55978 GATACCTTCAACGCAAGCGAAAGCTACGATTCGTTCAGCGAA----GGTTTGAGATCCGT 55923 Query 32838 --ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCAT 32895 ||||| | ||||| | || ||||| || ||||| || || || || || Sbjct 55922 CGATCCAAGTCATCGCCCACTGTGCTTTCTTCGCGACGCAAGGAATGGTTTCAATCGCGC 55863 Query 32896 TAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACA 32955 ||||||| | | | || || ||||||| | || ||||| | | |||||||||| Sbjct 55862 GGAAGAGATGATCTCTCTCTTTGTTATCTTTGATGTACGTATCGAGAAGGAGACTATACA 55803 Query 32956 TTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAG-AAGCATCTAGCCTCGGTA 33014 | || |||||||| || ||||| || || || ||||||||| ||||| | ||||| | Sbjct 55802 TCTCGGAATGAATATTCTCAATCGCGATCTGGAATCCGTAGAAAGCA-CGCGCCTCCGAG 55744 Query 33015 ATCTGTACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGC 33073 | || || |||| ||| |||||| || | ||| || || || ||||| || Sbjct 55743 ACTTGAACATCTG-ACATGAATCGTGAAGCGAGATTCTCTAAAACGATACCGTCTGATGC 55685 Query 33074 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAGTTTATTCC 33132 || || || || | || ||||| || || | ||| | | || |||| || | || Sbjct 55684 GGCGAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCACCGTCGT-TTAGATTCTCCC 55626 Query 33133 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33192 |||| |||| |||| ||| |||||||| | ||||| || ||||| || || | Sbjct 55625 AATCGCGTCCGTCTTGTGATAGATCGACTTCTTCGGCGGTCCAGAACGATGCTTCGGCTT 55566 Query 33193 TTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCT 33244 | |||||||| | |||||| | | || ||||| ||||| ||| ||||| Sbjct 55565 TCTTATACATCTCCCAGATCTGTGGGTAGTGAATCGGAAACATACAGAATCT 55514 >seq330 Length=201778 Score = 95.1 bits (104), Expect = 2e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525 |||||| | ||| || | ||||||| || ||||| |||||| || ||| | || || Sbjct 18415 AGTTCCGGAATTGAAGAGAGTAGGAGTTGCATGAGTGAACCATCGTTGAGACATTAAATG 18356 Query 63526 GTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 63584 ||| || | ||||| || || ||||| | ||| || || || || | || | ||| | Sbjct 18355 GTAAGTTTTGATAGCAGAATCAATATCTTCCTTG-TGGATGCCAACAGAAACCCTCATCA 18297 Query 63585 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63644 |||||| ||||| |||||||| | ||| | | ||| || | ||| ||| | || | Sbjct 18296 GCATGTGTTGAGGCCTTTCAACAACTTTGCCTTGGACTTTTAAGAGGTATGATCTCTCTA 18237 Query 63645 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 |||||||||||||| || | |||| ||| || || || || || || Sbjct 18236 GCGTTTTAAAACCAAAGTAATCGTATTCAAAATCACGATCATAGATGAT 18188 >seq1401 Length=32814 Score = 91.5 bits (100), Expect = 2e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 |||||| || || | |||| ||| || | ||| | || | || |||||| | |||||| Sbjct 17342 TCCTCCTTGGTCAACATATCGAGCAGTATCGTTAAATACACGCAGCATTGGGACAATACC 17283 Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345 ||| || || ||||| || || || || |||||| | |||||||||||| || ||| Sbjct 17282 ATTAGAAGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGAATATTATGAACTGA 17223 Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405 | ||| || || || || ||| || | || || ||| | || ||||| || Sbjct 17222 AACACCAATACCACCAGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATAT 17163 Query 63406 GCCCTCTATACTATCATCCATCATG 63430 |||||| || |||||||| ||||| Sbjct 17162 GCCCTCAATGCTATCATCTTTCATG 17138 Score = 89.7 bits (98), Expect = 7e-13 Identities = 92/118 (78%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 62557 GAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 62616 ||| ||||| || ||||||| ||||| ||||||||||| |||||||| || | | | || Sbjct 18660 GAGGATAAATGCATCTGCTAGACCTTGCACACCAATACCAATAGGTCTGTGACGCATGTT 18601 Query 62617 AGAGATTTCAGCT-TCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 62673 || ||| ||| ||| | |||||| ||||| | ||||||||| ||||||||||| Sbjct 18600 TGAAGTTTTTGCTGTCTCCAC-AGGATAGTAATTCACATCTATAATCTTATTGAGATT 18544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633570141676000