Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq308 132 4e-26 seq516 123 2e-23 seq275 118 9e-22 seq3586 107 2e-18 seq683 107 2e-18 seq2666 100 2e-16 seq543 93.3 4e-14 >seq308 Length=205501 Score = 132 bits (146), Expect = 4e-26 Identities = 169/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| || || | || || ||| |||| || | ||||| ||| ||| Sbjct 131391 ATGCAAATATTTGTGAAAACCCTCACTGGCAAAACCATTACCCTAGAAGTTGAGAGCTCT 131332 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| | || || || |||| || | ||| ||||| ||||| || || || ||| Sbjct 131331 GACACCGTTGA--CAATGTTAAAGCTAAGATTCA-AGACAAGGAAGGAATCCCTCCGGAC 131275 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||| | | || ||||| || ||||| | || |||| ||||||| | | ||||||| Sbjct 131274 CAACAGAGACTCATCTTTGCTGGTAAACAGCTTGAGGATGGTCGCACTCTTGCCGATTAC 131215 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || |||||||| || || ||||| ||||| | || |||||||| Sbjct 131214 AACATCCAGAAAGAATCAACCCTTCATTTGGTGCTTCGTCTGAGAGGAGG 131165 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | ||||| ||| |||| || | || || ||| || Sbjct 130707 ATGCAGATTTTTGTCAAGACCCTAACCGGAAAAACCATAACTTTGGAGGTTGAGAGCTCA 130648 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||| | || ||||| |||| | ||| |||||||||||||| ||||| ||||| Sbjct 130647 GACACTGTAGATAATGTGAAGGCAAAGATTCAA-GACAAAGAAGGGATCCCACCAGACCA 130589 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||| | | || ||||| || || || | || |||| ||| ||| | | || ||||| Sbjct 130588 ACAGAGACTCATCTTTGCTGGTAAGCAGCTTGAGGATGGTCGTACTCTTGCAGACTACAA 130529 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 || |||||||| || || || || Sbjct 130528 CATCCAAAAAGAGTCGACTCTTCA 130505 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| |||||| | || || || |||| || | || || || ||| Sbjct 131619 ATGCAAATCTTTGTTAAGACTCTTACAGGGAAGACCATTACTCTTGAGGTTGAAAGCTCT 131560 Query 25059 GACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||||| || | || | ||| ||| ||| || |||||||| || || || ||||| Sbjct 131559 GACACTATTGA-TAACGTCAAGGCAAAGATCCAAGATAAAGAAGGAATCCCTCCGGACCA 131501 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||| || || || | || |||| || ||| | | |||||||| Sbjct 131500 GCAGAGGCTCATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGGACTCTTGCGGATTACAA 131441 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 || || || || || || || || Sbjct 131440 CATCCAGAAGGAGTCAACACTTCA 131417 >seq516 Length=37039 Score = 123 bits (136), Expect = 2e-23 Identities = 158/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||||||||| || || |||||| | || || ||| ||| Sbjct 9988 ATGCAGATTTTTGTCAAGACTTTGACGGGCAAGACCATCATTCTTGAGGTCGAGAGTTCT 9929 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || | || || || | ||||| | ||| ||||||||||||||| | ||| ||| Sbjct 9928 GATACGGTTGA--CAATGTCAAGGCAAAGATTCA-TGACAAAGAAGGGATCCAACCGGAC 9872 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| || |||| ||||| || || || ||||||||| ||||| | | | |||||| Sbjct 9871 CAGCAGAGGCTTATCTTTGCGGGGAAGCAGCTAGAAGATGGTCGCATTTTAGCGGATTAC 9812 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || |||||||| || || || ||| | || || Sbjct 9811 AACATCCAAAAAGAGTCGACTCTTCATCTTGTTCT 9777 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || || | || || ||| |||| || | || || ||| || Sbjct 10216 ATGCAGATTTTTGTGAAAACCCTAACTGGCAAAACCATAACTTTGGAGGTTGAGAGCTCA 10157 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || | ||| |||| | ||| |||||||||||||| ||||| ||||| Sbjct 10156 GACACAATAGATAATGTAAAGGCAAAGATTCAA-GACAAAGAAGGGATCCCACCAGACCA 10098 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | | || ||||| || || || | || |||| ||| ||| | | || ||||| Sbjct 10097 ACAAAGACTCATCTTTGCTGGTAAGCAGCTTGAGGATGGTCGTACTCTTGCAGACTACAA 10038 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| ||||| || || || | ||||| Sbjct 10037 CATCCAAAAGGAATCAACACTTCACCTTGTGCT 10005 >seq275 Length=143682 Score = 118 bits (130), Expect = 9e-22 Identities = 156/214 (73%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||||||||| || |||||| | ||||| || | ||||| | ||||| ||| ||| Sbjct 123446 ATGCAAATATTCGTGAAGACTCTCACCGGGAAGACAATCACCCTTGAAGTCGAGAGCTCT 123505 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 |||||||| || |||| |||| || ||| || || ||||| ||||| || || Sbjct 123506 GACACTATTGACAACGTCA---AAGC-CAAGATCCAGGATAAGGAAGGTATTCCTCCGGA 123561 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||||| | || || || || || || | || |||| |||||| ||| |||||| Sbjct 123562 CCAGCAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGATGGTCGCACCTTGGCCGATTA 123621 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTG 25208 ||| |||||||| || || || || ||||| ||| Sbjct 123622 CAACATTCAAAAGGAGTCAACCCTTCATTTGGTG 123655 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||| ||||| |||| || |||| |||||| ||| Sbjct 139556 ATGCAGATCTTCGTCAAGACCTTGACTGGTAAGACCATTACCCTCGAGGTGGAGAGCTCT 139615 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || |||| || ||| |||||||| || || ||||| ||||| Sbjct 139616 GACACCATTGACAACGTGAAAGCCAAGATCCAAGACAAAGAGGGTATCCCACCGGACCAG 139675 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || || ||||| || || | || |||| ||| || ||| |||||||||| Sbjct 139676 CAGAGGTTGATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGTACCTTGGCCGATTACAAT 139735 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGT 25207 || || || || || || || ||||| || Sbjct 139736 ATCCAGAAGGAGTCAACCCTTCATTTGGT 139764 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||| ||||| |||| || |||| |||||| || Sbjct 123218 ATGCAGATCTTCGTCAAGACCTTGACTGGTAAGACCATTACCCTCGAGGTGGAGAGCTCC 123277 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || |||| || ||| |||||||| || || ||||| ||||| Sbjct 123278 GACACCATTGACAACGTGAAAGCCAAGATCCAAGACAAAGAGGGTATCCCACCGGACCAG 123337 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || || ||||| || || | || |||| ||| || ||| |||||||||| Sbjct 123338 CAGAGGTTGATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGTACCTTGGCCGATTACAAT 123397 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGT 25207 ||||| || || || || || || || || Sbjct 123398 ATTCAGAAGGAGTCAACCCTTCACTTGGT 123426 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||||||||||| || |||||||| | || |||||| || Sbjct 123903 ATGCAGATTTTCGTGAAGACTTTGACCGGAAAGACCATCACACTGGAGGTGGAGAGCTCA 123962 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| || ||| ||||| ||||| || || || || || Sbjct 123963 GACACCATTGATAATGTTAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCGGATCAG 124022 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || || || || || | || |||| |||||| | | || ||||| Sbjct 124023 CAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGATGGTCGCACACTTGCTGACTACAAC 124082 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || || || || || Sbjct 124083 ATCCAGAAGGAGTCAACCCTTCACTTGGTCCT 124114 >seq3586 Length=17470 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | ||||| ||| ||||||| | || || ||| ||| Sbjct 5537 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAAACCATCACTTTGGAGGTCGAGAGCTCT 5596 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||| || | ||| || ||| ||||| ||||| || || || || || Sbjct 5597 GACACTATTGATAATGTCAAGGCTAAGATCCAGGACAAGGAAGGTATCCCTCCGGATCAG 5656 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| | |||| |||||||| || || | || |||| |||||| | | || ||||| Sbjct 5657 CAGAGACTTATCTTTGCCGGTAAGCAGCTTGAGGATGGTCGCACACTCGCTGACTACAAC 5716 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || ||||| || ||||| || ||||| || || | || ||||| || Sbjct 5717 ATCCAAAAGGAGTCCACTCTTCATTTGGTTCTTCGTCTGAGAGGTGG 5763 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||||||||| || || | || || | || || ||| || Sbjct 6221 ATGCAAATCTTTGTGAAGACTTTGACAGGCAAGACTATTACCTTGGAGGTTGAGAGCTCA 6280 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || | || || || | ||| ||||| |||||||| || || ||||| Sbjct 6281 GACACAATTGATAATGTTAAGGCTAAGATTCA-GGACAAGGAAGGGATCCCTCCGGACCA 6339 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||| | | || || || || ||||| | || |||| ||| ||| ||| |||||||| Sbjct 6340 ACAGAGACTCATCTTCGCTGGAAAACAGCTCGAGGATGGTCGGACTTTGGCTGATTACAA 6399 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAA 25228 || || || || || || || || || || || | || | || ||||| Sbjct 6400 CATCCAGAAGGAGTCGACCCTGCACTTGGTTCTTCGTCTTCGTGGTGGAAA 6450 >seq683 Length=32930 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 |||||||| ||||| ||||| || |||||| || | || ||||| || |||||||||||| Sbjct 24508 GACAAAGAGGGGATACCACCAGATCAACAGAGGTTGATATTTGCTGGTAAACAATTAGAA 24567 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 |||| ||| ||| | | |||||||| ||||| ||||| || || | || || || | Sbjct 24568 GATGGTCGAACTTTAGCTGATTACAACATTCAGAAAGAGTCTACAATTCACTTGGTTTTG 24627 Query 25212 AGGCTAAGAGGAGG 25225 ||||| ||||| || Sbjct 24628 AGGCTTAGAGGTGG 24641 >seq2666 Length=20083 Score = 100 bits (110), Expect = 2e-16 Identities = 153/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || || | || || ||| |||| || | ||||| ||| ||| Sbjct 9508 ATGCAGATTTTTGTGAAAACCCTAACTGGCAAAACCATAACCCTAGAAGTTGAGAGCTCT 9449 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| | || || || | || || | |||| |||||||||||||| | | | ||| Sbjct 9448 GACACCGTTGA--CAATGTCAAGGCCAAGATTCAC-GACAAAGAAGGGATCCAAGCAGAC 9392 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||| | |||| || || ||||| ||| | ||||||| || |||| | | || || Sbjct 9391 CAACAGAGACTTATCTTCGCTGGCAAGCAACTTGAAGATGGTCACACTCTTGCAGACTAT 9332 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || ||||| ||||| || || || | ||||| Sbjct 9331 AACATCCAAAAGGAATCAACACTTCACCTTGTGCT 9297 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/207 (71%), Gaps = 5/207 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || |||| |||||||||| ||||| ||| | || || || ||| ||| Sbjct 9280 ATGCAGATTATTGTCAAGACTTTGATGGGTAAGATCATTCCTGTTGAGGTTGAGAGCTCT 9221 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || |||||| | || | ||| ||||||||||||||| || | ||| | Sbjct 9220 GATACGATTGATGATCTGAAGACCAAGATTCA-TGACAAAGAAGGGATCGCAGCGGACGA 9162 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAG---AAGATGATCGCACTGTGGGCGATTA 25174 |||| || | |||||| ||| || | || | ||| || ||||||| | | ||||| Sbjct 9161 ACAGAGGCTAGTTTTTGTCGGAAAGGAGTTCGTCCAAGGTGGTCGCACTTTAGCAGATTA 9102 Query 25175 CAATATTCAAAAAGAATCCACGCTACA 25201 | ||||||| ||||| || || || || Sbjct 9101 CGATATTCAGAAAGATTCAACTCTTCA 9075 >seq543 Length=94172 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || |||| |||||||||| ||||| ||| | | ||||| ||| ||| Sbjct 1665 ATGCAGATCTTTGCCAAGACTTTGATGGGTAAGATCATTCCTTTTGAAGTTGAGAGCTCT 1606 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || ||||| || || | |||| |||||||||||||||| ||| | || Sbjct 1605 GATACGATTGATAATCTGAAAGCCAAGATTCAC-GACAAAGAAGGGATTCAACCAGCACA 1547 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || | || ||||| || | || |||| ||||||| | | ||||||| Sbjct 1546 ACAGCTGCTTGTCTTCAATGGCAAGAAACTTGAGGATGGTCGCACTCTTGCATATTACAA 1487 Query 25178 TATTCAAAAAGAATCCAC 25195 ||| |||| ||||| || Sbjct 1486 GATTAAAAAGGAATCAAC 1469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433286753945150