Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq1269 131 2e-25 seq504 104 3e-17 >seq1269 Length=73620 Score = 131 bits (144), Expect = 2e-25 Identities = 288/401 (72%), Gaps = 37/401 (9%) Strand=Plus/Minus Query 166681 GAGACCACTGAAACTGAGTCT-CAAAACTATGGTTA---CAAGTTTGGTC-AAGAAGAAG 166735 || ||||| |||| ||| ||| | || | ||||| || || |||| ||||||||| Sbjct 6614 GAAACCACAGAAAATGAATCTGCTAATGCAAGGTTAGGCCAGATTCGGTCCAAGAAGAAG 6555 Query 166736 AGACCT-ACAACATC-GT--GGCTGCTCATGGTTA-CTTCGGTCGCCTG--ATCTTCCAA 166788 ||| || ||||||| || ||||||||||||||| || || || || ||||||||| Sbjct 6554 AGAACTTACAACATTTGTTAGGCTGCTCATGGTTATTTTTGGCCGATTGACATCTTCCAA 6495 Query 166789 TACGC---TTCCTTCAACAACT-CTCGCTCGCTGCACTTCTTC-CT-CGCAGCATGG-CC 166841 || || || | ||||||||| |||| || | || |||||| || || || ||| || Sbjct 6494 TATGCTAGTTTCATCAACAACTCCTCGTTCTTTACATTTCTTCTCTAGGCGGCTTGGCCC 6435 Query 166842 TGTTGT-CGGTATCTG-GTTTAC-TGCTCTTGGTGTTAGCA-CCATGGCATTCAACCTCA 166897 || || ||||| || |||||| |||| | ||| | | | | ||||| |||||||| | Sbjct 6434 GGTAGTAGGGTATTTGTGTTTACTTGCTTTAGGTTTATGTAGCTATGGCTTTCAACCTAA 6375 Query 166898 ACGGTTTCAACTTCAACCAGTC-CATCA---TCGATGGT--CAGGGTCGTGT--GCTCAA 166949 | |||||||| ||||||| | |||| | | || | || || ||||| | || Sbjct 6374 ATGGTTTCAATTTCAACCCCCCAAATCAGTGTAGTTGATAGCAAGGACGTGTTAATTGAA 6315 Query 166950 CACTTGGGCAGATGTCCTCAACCGTGCTGGTC-TGGGTATGGAAGTAAT-GCACGAGCGT 167007 |||||||| ||| | | ||||||| | | ||||||||||||| || ||| || ||| Sbjct 6314 TACTTGGGCTGATATTATTAACCGTGGTAACCTTGGGTATGGAAGTTATGGCATGAACGT 6255 Query 167008 A-ATGCTC--AC-AACTTCCCTCTGGATCTTGCTGCTGCTG 167044 | | |||| || |||||||| || || || ||||||| || Sbjct 6254 ACACGCTCCAACGAACTTCCCACTAGACCTAGCTGCTGTTG 6214 >seq504 Length=87311 Score = 104 bits (114), Expect = 3e-17 Identities = 283/418 (68%), Gaps = 43/418 (10%) Strand=Plus/Minus Query 167681 AATGCGATTGCTTTTTCTGGTCCGATTGCTGTCTTTGTGTCTGTTTTTC---TCATCTAT 167737 ||||| || || || |||||||| |||||||| ||||| ||||| || | | || ||| Sbjct 51320 AATGCAATCGCATTCTCTGGTCCAATTGCTGT-TTTGTTTCTGTCTTCCGAGTAATTTAT 51262 Query 167738 CCTC--TCGGACAGTCCAGTTGGTTCTTTGCACCGTCGTTTGGTGTTGCAGCGATATTTA 167795 || | | || || || || ||||||||| || ||| | | |||||| Sbjct 51261 CCACGTTAGGTCAATCTGGT--GTTCTTTGCGCCTATTTTT--------ACCTATATTTC 51212 Query 167796 GATTCCTACTATTCCTAC--AGGGTTTCCATAACTGGACGCTCAACCCTTTCCATATGAT 167853 ||||| | || || | | ||| || ||||| ||||| | ||||| || |||||||| Sbjct 51211 GATTCATCCTTTTTTTTCCAAGGCGTTTCATAATTGGACATTGAACCCATTTCATATGAT 51152 Query 167854 GGG-AGTTGCTGGTATCCT--AGGCGGTGCATTGCT-TTCTGCAATCCATGGTGTTAC-A 167908 ||| ||| || ||| | || |||| || |||| | | || || ||||||| ||| Sbjct 51151 GGGAAGTCGCCGGTGTACTGGCGGCGCGGCTCTGCTATGCGGCTATTCATGGTGCTACTG 51092 Query 167909 GTAGAGAATACTCTGTATGAAGATGGTGAGCAA-------GCAAACA---CTTTCAAAGC 167958 ||||| |||||| | | ||||||||||| | | ||| | | || | || Sbjct 51091 GTAGAAAATACTTTATTTGAAGATGGTGGGGGATTTTGTGGCAGAGATACATTCCGCTGC 51032 Query 167959 ATTTGATACGACTCAGGAAGAGGAAACTTA-TTCCATGGTC-ACTGCT--AACCGATTCT 168014 ||| | | ||||| | || |||||||| ||| |||||| || ||| | ||| || | Sbjct 51031 TTTTAACCCAACTCAAGCCGAAGAAACTTATTTCAATGGTCAACCGCTACACCCGCTTTT 50972 Query 168015 GGTCTCAAA--TTTTTGGTATTGCTTTCAGCAA--TAAGCGTTGGTTGCAC--TTCTT 168066 |||| |||| |||| || ||||||| ||| ||| |||||| | ||| ||||| Sbjct 50971 GGTCACAAATCTTTTGGGGGTTGCTTTATCCAATTTAAACGTTGGCTTCACATTTCTT 50914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567176623976000