Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq144 251 8e-62 seq422 233 2e-56 seq712 98.7 1e-15 seq1541 95.1 1e-14 seq4620 93.3 5e-14 seq1435 93.3 5e-14 seq835 89.7 6e-13 seq141 87.8 2e-12 seq237 86.0 7e-12 seq2729 84.2 2e-11 seq154 84.2 2e-11 seq4925 82.4 9e-11 seq504 82.4 9e-11 seq410 82.4 9e-11 seq169 82.4 9e-11 >seq144 Length=115930 Score = 251 bits (278), Expect = 8e-62 Identities = 519/758 (68%), Gaps = 13/758 (2%) Strand=Plus/Minus Query 92917 CAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAG 92976 ||| | |||||| || ||||| || || |||||| |||||| |||| ||||| || | Sbjct 56272 CAAAAGTCTATCCGCAACAAACTCAATATACTGACTCATCAACTCACGGTTCATCCCAAC 56213 Query 92977 AAGACGTACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCA 93035 | ||| || || || |||||| || || ||| ||||||| | ||||| || | Sbjct 56212 CA-ACGCGCAAGGAAGCGCGTCGCACACAAACTCTCTCTCGATCTCGACGGCGTCGCAGA 56154 Query 93036 AGATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAAT-TGTACATTAAGCAC 93094 |||| | || | || | || || || | | | |||| | | ||| Sbjct 56153 CGATTGACTTCACGCG-CTCCTCCGTCAGCTTCGTCCTCAAGAGCGTGTAGAGGAGGCAA 56095 Query 93095 GCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCT 93154 || || ||| ||||| ||||||||||| || ||||| || || ||| |||||||| Sbjct 56094 GCGAAATCGCAGTGTAAGCCTTCGTCTCGAGAGATCAATTCGTTAGAGAAGGTTAAACCA 56035 Query 93155 GGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAA-CTACCAGaaaaaaaTAT 93213 || | |||||||||||||| ||||| || || || ||| || ||||| || || || || Sbjct 56034 GGCATGAGTCCTCGTTTCTTAAGCCAGAAGATGGA-GCAGAAGCTACCGGAGAAGAAGAT 55976 Query 93214 ACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAA-TTTGCGGAATTACTGCTGA 93272 |||||| ||| || || || || || ||||| || || |||| | || | | || Sbjct 55975 ACCTTCAACGCAAGCGAAAGCTACGATTCGTTCAGCGAAGGTTTGAG--AT--CCGTCGA 55920 Query 93273 TCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAA 93332 |||| | | ||||| | ||||| ||| | ||||| | ||||| || ||| | Sbjct 55919 TCCAAGTCATCGCCCACTGTGCTTTCTTCGCGACGCAAGGAATGGTTTCAATCGCGCGGA 55860 Query 93333 ATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTT 93392 | || | ||||| ||| | |||| ||||| ||||||| | ||| |||||| | Sbjct 55859 AGAGATGATCTCTCTCTTTGTTATCTTTGATGTACGTATCGAGAAGGAGACTATACATCT 55800 Query 93393 CAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCT 93452 | ||||| | |||||| || || || ||||||||||||||| | || |||| || | Sbjct 55799 CGGAATGAATATTCTCAATCGCGATCTGGAATCCGTAGAAAGCACGCGCCTCCGAGACTT 55740 Query 93453 GCACTTCTTGAGAA-AATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCa 93511 | || ||| || | |||| ||||||| || || ||||| || ||||| || Sbjct 55739 GAACATCT-GACATGAATCGTGAAGCGAGATTCTCTAAAACGATACCGTCTGATGCGGCG 55681 Query 93512 aaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCG 93571 || ||||| | | || || || || || ||| | || || || || ||||||||| Sbjct 55680 AAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCACCGTCGTTTAGATTCTCCCAATCG 55621 Query 93572 GATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTG 93631 | |||| ||| ||||||||||||||| | ||||| ||||||||||| ||||| || Sbjct 55620 CGTCCGTCTTGTGATAGATCGACTTCTTCGGCGGTCCAGAACGATGCTTCGGCTTTCTTA 55561 Query 93632 TACATATCCCATATGTCTTGATATTGAATTGGAAATAT 93669 ||||| ||||| || | | | || ||||| ||||| || Sbjct 55560 TACATCTCCCAGATCTGTGGGTAGTGAATCGGAAACAT 55523 >seq422 Length=101449 Score = 233 bits (258), Expect = 2e-56 Identities = 527/773 (68%), Gaps = 18/773 (2%) Strand=Plus/Plus Query 92917 CAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAG 92976 |||||| | ||| |||||||| || || || ||| ||||||||||| ||||| || | Sbjct 43590 CAATAACCGATCCGCTACAAAATCAATATATTGACTCATCAAATCACGGTTCATCCCAAC 43649 Query 92977 AAGACGTACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCA 93035 | ||| || || || |||||| || || ||| |||| || |||| || || | Sbjct 43650 CA-ACGCGCAAGGAAGCGCGTCGCACACAAACTCTCTCTCAATCTCAACCGCATCACGAA 43708 Query 93036 AGATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATA-ATTGTACATTAAGCAC 93094 ||| | | || | | | || | || ||| | | | || || || || Sbjct 43709 CAATTGATTTCACACGA-TCTTCACTAAGCTTGAATCGAAGAAGACTATAAATCAAACAA 43767 Query 93095 GCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCT 93154 || || || ||| | ||||||||||| ||| |||| || ||| ||| || | || Sbjct 43768 GCGAAATCACAATGAAGACCTTCGTCTCTTGAGATCAGTTCGTTGGAGAAAGTAAGTCCA 43827 Query 93155 GGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATA 93214 || | | ||||||||||| | ||| || || ||| ||| ||||| || || || ||| Sbjct 43828 GGCATTAAACCTCGTTTCTTCAACCAGAAAATAGAACAAAAGCTACCGGAGAAGAAGATA 43887 Query 93215 CCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAA-TTTGCGGAATTACTGCTGAT 93273 ||||| ||| ||||| ||||| || ||||| || || |||| | || | | ||| Sbjct 43888 CCTTCAACGCAAGCAAAAGCCACGATTCGTTCAGCGAAGCTTTGAG--AT--CCGTCGAT 43943 Query 93274 CCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAA 93333 |||||| | ||||| | ||||| ||| | | |||||| | ||||| || ||| || Sbjct 43944 CCATTTCATCGCCCATTGTGCTTTCTTCGTTACACAAGGAATGGTTTCAATTGCGCGGAA 44003 Query 93334 TAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTC 93393 || | ||||| ||| | |||| || || ||||||| | ||| |||||| || Sbjct 44004 GAGATGATCTCTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTATACATCTC 44063 Query 93394 AGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTG 93453 ||| || | |||||| || || ||||| |||||||| || | ||| || | |||||| Sbjct 44064 AGAGTGAATATTCTCAATCGCGATTTGAAATCCGTAAAAGGCACGAGCCTCGGAGATCTG 44123 Query 93454 CACTTCTTGAGAA-AATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaa 93512 || || || | |||| | ||||| || || || || || ||||| || | Sbjct 44124 AACATCG-GACATGAATCGGGTTGATAGATTCTCTAAAACGATGCCGTCTGATGCGGCGA 44182 Query 93513 aaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATC-TTTAAGC--TTATCCCAAT 93569 | || || | || || || || || ||| || || || |||||| || ||||| | Sbjct 44183 AGAAGGCGAGTACGTGTTTGATGAAGTGTCGTTCGTCGTCGTTTAAGGAATTTTCCCAGT 44242 Query 93570 CG-GATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTT 93628 || ||| ||||| || ||||||||||||||| | ||||| || || ||||| |||||| Sbjct 44243 CGCGATT-ATCTTGAGATAGATCGACTTCTTCGGCGGTCCAGAATGAAGCTTCGGCTTTT 44301 Query 93629 TTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACA-AAACGAT 93680 |||||||| |||||||| | ||||||| ||||| || || ||| || |||| Sbjct 44302 TTGTACATCTCCCATATCTGAGGATATTGGATTGGGAACAT-ACAGAATCGAT 44353 >seq712 Length=41363 Score = 98.7 bits (108), Expect = 1e-15 Identities = 81/96 (84%), Gaps = 7/96 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| ||||| |||||| ||||| || Sbjct 4071 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTTAAGTTCTGGT--CCTCGTGAGAGG 4014 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTAT 126356 |||||||||| |||||||| ||||| |||| |||| Sbjct 4013 GCGTGGGTTCAAACCCCACTTCTGAC-AATTCTTAT 3979 >seq1541 Length=43891 Score = 95.1 bits (104), Expect = 1e-14 Identities = 86/106 (81%), Gaps = 8/106 (8%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 27354 AGTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 27411 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366 |||||||||| || ||||| ||||||| ||| |||| |||||| Sbjct 27412 GCGTGGGTTCAAATCCCACTTCTGACAATATATGATTG--ATTTTT 27455 >seq4620 Length=8050 Score = 93.3 bits (102), Expect = 5e-14 Identities = 87/109 (80%), Gaps = 10/109 (9%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | Sbjct 4526 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTAAGAGG 4583 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369 |||||||||| |||||||| ||||||| | ||| || |||||||| Sbjct 4584 GCGTGGGTTCAAACCCCACTTCTGACAATTGATTTTT----TTTTTGTT 4628 >seq1435 Length=38850 Score = 93.3 bits (102), Expect = 5e-14 Identities = 88/109 (81%), Gaps = 9/109 (8%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | Sbjct 10225 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTAAGAGG 10168 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369 |||||||||| |||||||| ||||| ||| ||| ||| |||||||| Sbjct 10167 GCGTGGGTTCAAACCCCACTTCTGAC-AATAATTTTTG--CTTTTTGTT 10122 >seq835 Length=50725 Score = 89.7 bits (98), Expect = 6e-13 Identities = 76/93 (82%), Gaps = 2/93 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 35938 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 35881 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||| || |||||| ||| |||||| || || Sbjct 35880 GGGTTCAAATCCCACAGCTGTCAAATTTTTGTT 35848 >seq141 Length=139291 Score = 87.8 bits (96), Expect = 2e-12 Identities = 73/88 (83%), Gaps = 6/88 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 55691 AGTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 55748 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||| || ||||| ||||||| Sbjct 55749 GCGTGGGTTCAAATCCCACTTCTGACAA 55776 >seq237 Length=169939 Score = 86.0 bits (94), Expect = 7e-12 Identities = 76/94 (81%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | ||| Sbjct 76963 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGGGCG 76904 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 ||||||| || ||||| ||||||| ||||| || Sbjct 76903 TGGGTTCAAATCCCACTTCTGACAATTTATTGTT 76870 >seq2729 Length=11875 Score = 84.2 bits (92), Expect = 2e-11 Identities = 74/90 (82%), Gaps = 3/90 (3%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 7785 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 7728 Query 126328 TTCGAACCCCACACCTGACAAATTATTATT 126357 ||| || |||||| ||| | |||||| ||| Sbjct 7727 TTCAAATCCCACAGCTGTC-AATTATCATT 7699 >seq154 Length=191990 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/85 (82%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 173684 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 173627 Query 126325 GGGTTCGAACCCCACACCTGACAAA 126349 |||||| || |||||| ||| |||| Sbjct 173626 GGGTTCAAATCCCACAGCTGTCAAA 173602 >seq4925 Length=30299 Score = 82.4 bits (90), Expect = 9e-11 Identities = 74/91 (81%), Gaps = 3/91 (3%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 19503 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 19446 Query 126328 TTCGAACCCCACACCTGACAAAT-TATTATT 126357 ||| || |||||| ||| ||| | |||| || Sbjct 19445 TTCAAATCCCACAGCTGTCAACTATATTTTT 19415 >seq504 Length=87311 Score = 82.4 bits (90), Expect = 9e-11 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 11406 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 11349 Query 126325 GGGTTCGAACCCCACACCTGACAA 126348 |||||| || |||||| ||| ||| Sbjct 11348 GGGTTCAAATCCCACAGCTGTCAA 11325 >seq410 Length=144570 Score = 82.4 bits (90), Expect = 9e-11 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | ||| Sbjct 46951 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGGGCG 46892 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| |||||||| |||||| Sbjct 46891 TGGGTTCAAACCCCACTTCTGACA 46868 >seq169 Length=220106 Score = 82.4 bits (90), Expect = 9e-11 Identities = 79/99 (80%), Gaps = 8/99 (8%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | Sbjct 57057 AGTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTAAGAGG 57114 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA--AATTATTATT 126357 |||||||||| || ||||| |||||| | || ||||| Sbjct 57115 GCGTGGGTTCAAATCCCACTTCTGACAGTAGTTTTTATT 57153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556806436464400