Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq3586 143 2e-29 seq308 136 3e-27 seq275 136 3e-27 seq863 120 3e-22 seq516 114 1e-20 seq1 95.1 1e-14 seq683 86.0 5e-12 >seq3586 Length=17470 Score = 143 bits (158), Expect = 2e-29 Identities = 175/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 22198 TAGTTTTATACATTTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTC 22257 || ||| || |||||| |||||||| |||| || ||||| | || || || || || Sbjct 5288 TAATTTGATGAATTTGTTCAGATGCAAGTTTTCGTGAAAACACTCACTGGCAAGACCATC 5347 Query 22258 ACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAG 22317 ||||| || || || | | | |||||| | ||| || | || ||| ||||| || ||| Sbjct 5348 ACTCTCGATGTCGAGAGCTCTGATACCATCGACAATGTTAAGGCAAAGATTCAGGATAAG 5407 Query 22318 GAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCAC 22377 || || ||||| || ||||| ||| | | || || ||||| |||||| |||| ||| | Sbjct 5408 GAAGGCATTCCTCCGGATCAGCAAAGGTTGATCTTCGCCGGAAAACAGCTAGAAGATGGC 5467 Query 22378 CGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATT 22436 || ||| | ||||||||||||| || |||||||| ||| | || || ||| | ||||| Sbjct 5468 CGTACCTTGGCCGATTACAACATCCAGAAAGAATCAACCCTCCACTTGGTTCTCCGATT 5526 >seq308 Length=205501 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| ||||| | || || ||||| | || || ||||| || | | | Sbjct 131391 ATGCAAATATTTGTGAAAACCCTCACTGGCAAAACCATTACCCTAGAAGTTGAGAGCTCT 131332 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||||| ||| || | ||| || |||||||||||||| || || || || || ||| Sbjct 131331 GACACCGTTGACAATGTTAAAGCTAAGATTCAAGACAAGGAAGGAATCCCTCCGGACCAA 131272 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| || |||||| | |||||| ||||| | ||||||||||| Sbjct 131271 CAGAGACTCATCTTTGCTGGTAAACAGCTTGAGGATGGTCGCACTCTTGCCGATTACAAC 131212 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || |||||||| ||| | ||||| || | || || | |||||| Sbjct 131211 ATCCAGAAAGAATCAACCCTTCATTTGGTGCTTCGTCTGAGAGGAGGT 131164 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| ||||||||||| || | ||||| ||||| | ||| | |||||||| | | | Sbjct 130936 GATGCAGATTTTTGTTAAGACCCTTACCGGAAAAACCATAACTTTGGAAGTGGAGAGCTC 130877 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || || || ||| || | || |||||| ||||||||||| || || || || || || Sbjct 130876 GGACACAGTCGACAATGTGAAGACAAAAATCCAAGACAAGGAAGGGATCCCTCCGGACCA 130817 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 ||| | || || || || || |||||| | |||||| || || | | |||||||| Sbjct 130816 ACAGAGACTCATCTTCGCTGGTAAACAGCTTGAGGATGGTCGAACTCTTGCTGATTACAA 130757 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGT 22427 ||| || || || || ||| | || || || Sbjct 130756 CATCCAGAAGGAGTCAACCCTGCACTTGGT 130727 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||||||||| | ||| | || || |||| | | Sbjct 131163 ATGCAGATATTCGTCAAGACCCTTACCGGTAAAACCATAACTTTGGAGGTTGAAAGCTCA 131104 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||||| ||| || | || || || ||||||||||| || || |||| || ||| Sbjct 131103 GATACCGTTGACAATGTAAAGGCCAAGATCCAAGACAAGGAAGGGATCTCACCAGACCAA 131044 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || ||||| |||||||| ||| | || ||| ||||| | | ||||||||| Sbjct 131043 CAGAGACTCATATTCGCCGGCAAGCAGCTCGAAGATGGTCGCACACTTGCTGATTACAAC 130984 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || || ||| | ||| | || || || | || || || Sbjct 130983 ATTCAGAAGGAGTCAACCCTCCATCTTGTGCTGAGACTCCGTGGTGG 130937 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || || ||||||| ||||| | ||| | || || || | | | Sbjct 130707 ATGCAGATTTTTGTCAAGACCCTAACCGGAAAAACCATAACTTTGGAGGTTGAGAGCTCA 130648 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || || || || | || ||| ||||||||||| || || || ||||| || ||| Sbjct 130647 GACACTGTAGATAATGTGAAGGCAAAGATTCAAGACAAAGAAGGGATCCCACCAGACCAA 130588 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| || || ||| | |||||| || || | | || |||||| Sbjct 130587 CAGAGACTCATCTTTGCTGGTAAGCAGCTTGAGGATGGTCGTACTCTTGCAGACTACAAC 130528 Query 22399 ATTCAAAAAGAATCCAC 22415 || |||||||| || || Sbjct 130527 ATCCAAAAAGAGTCGAC 130511 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| |||||||| ||| | || || || || | |||||||| || |||| | | Sbjct 131619 ATGCAAATCTTTGTTAAGACTCTTACAGGGAAGACCATTACTCTTGAGGTTGAAAGCTCT 131560 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | |||| ||| || ||||| || || || || || || || || Sbjct 131559 GACACTATTGATAACGTCAAGGCAAAGATCCAAGATAAAGAAGGAATCCCTCCGGACCAG 131500 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| || || ||| | |||||| ||| || | | ||||||||| Sbjct 131499 CAGAGGCTCATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGGACTCTTGCGGATTACAAC 131440 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 131439 ATCCAGAAGGAGTCAAC 131423 >seq275 Length=143682 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || ||| | ||||| || || |||| |||||||| || | | | Sbjct 123446 ATGCAAATATTCGTGAAGACTCTCACCGGGAAGACAATCACCCTTGAAGTCGAGAGCTCT 123505 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | ||||| || || || || ||||| |||||||| || || || Sbjct 123506 GACACTATTGACAACGTCAAAGCCAAGATCCAGGATAAGGAAGGTATTCCTCCGGACCAG 123565 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || || || ||| | |||||| |||||| | ||||||||||| Sbjct 123566 CAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGATGGTCGCACCTTGGCCGATTACAAC 123625 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||| || || ||| | ||||| || ||||| | || |||||| Sbjct 123626 ATTCAAAAGGAGTCAACCCTTCATTTGGTGTTGCGTCTTCGTGGAGGT 123673 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || ||||| ||||||| || || |||||||||| ||||| | | | Sbjct 139100 ATGCAAATCTTCGTCAAAACCCTAACCGGAAAGACTATCACTCTTGAGGTGGAGAGCTCT 139159 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || || ||||| ||||||||||| ||||| || || Sbjct 139160 GACACCATCGACAACGTCAAGGCTAAGATCCAAGATAAGGAGGGTATCCCACCGGACCAG 139219 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || || ||||| || || | ||||| ||| || | | || |||||| Sbjct 139220 CAAAGATTGATCTTCGCCGGAAAGCAACTCGAGGACGGCCGTACTTTAGCTGACTACAAC 139279 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTT 22428 ||||| || || || ||| | ||| ||||| Sbjct 139280 ATTCAGAAGGAGTCGACCCTTCATCTAGTT 139309 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || ||||| || || ||||| || || ||||| | || ||||| | | Sbjct 139328 ATGCAAATCTTCGTTAAGACCTTGACCGGAAAGACTATCACTTTGGAGGTGGAGAGTTCT 139387 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | | ||| ||||| |||||||||||||| || ||||| || || Sbjct 139388 GACACCATCGACAACGTGAAAGCTAAAATCCAAGACAAGGAGGGAATCCCACCGGACCAG 139447 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || || ||||| || || | ||||| ||| || | | || |||||| Sbjct 139448 CAGAGATTGATCTTCGCCGGAAAGCAACTTGAGGACGGCCGTACTTTGGCTGACTACAAC 139507 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || || | ||||| || ||||| | || || ||| Sbjct 139508 ATCCAGAAGGAGTCTACACTTCATTTGGTCTTGCGTCTACGTGGTGGT 139555 >seq863 Length=117140 Score = 120 bits (132), Expect = 3e-22 Identities = 147/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||||||||| || || || ||||| |||| ||||| || |||| ||||| || || | Sbjct 77865 AAAGATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATCACCCTTGAGGTCGAGTC 77806 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | | || ||| | ||| || ||||| || || |||||||||||||| || ||||| || Sbjct 77805 CTCTGACACCATCGACAATGTCAAAGCGAAGATCCAAGACAAGGAGGGAATCCCACCGGA 77746 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 || || || | || || ||||| |||||| | || || ||| || || |||| || Sbjct 77745 CCAGCAGCGATTGATTTTCGCCGGGAAACAGCTCGAAGACGGCCGTACTCTCGCCGACTA 77686 Query 22395 CAACATTCAAAAAGAATCCAC 22415 |||||| || || ||||| || Sbjct 77685 CAACATCCAGAAGGAATCGAC 77665 >seq516 Length=37039 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| |||||||| || ||||| || || || || ||| |||||| || || | | Sbjct 9989 GATGCAGATTTTTGTCAAGACTTTGACGGGCAAGACCATCATTCTTGAGGTCGAGAGTTC 9930 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||||| || ||| || |||| ||| ||||| ||||| || || || | ||| || || Sbjct 9929 TGATACGGTTGACAATGTCAAGGCAAAGATTCATGACAAAGAAGGGATCCAACCGGACCA 9870 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | ||||| ||||| || || ||| |||| ||| |||| | | |||||||| Sbjct 9869 GCAGAGGCTTATCTTTGCGGGGAAGCAGCTAGAAGATGGTCGCATTTTAGCGGATTACAA 9810 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||| |||||||| || || | ||| | ||| | || | ||||| || Sbjct 9809 CATCCAAAAAGAGTCGACTCTTCATCTTGTTCTCCGTCTCCGCGGTGG 9762 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||||||||| | ||| | || || |||| | | Sbjct 10444 ATGCAGATATTCGTCAAGACCCTTACCGGTAAAACCATAACTTTGGAGGTTGAAAGCTCA 10385 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| || | || || || ||||||||||| || || ||||| || ||| Sbjct 10384 GATACCATTGACAATGTGAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAA 10325 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | || ||||| |||||||| ||| | || ||| ||||| | | ||||||||| Sbjct 10324 CAAAGACTCATATTCGCCGGCAAGCAGCTCGAAGATGGTCGCACTCTTGCTGATTACAAC 10265 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| || || || || Sbjct 10264 ATTCAGAAGGAGTCAAC 10248 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| ||||| |||| || ||||| | ||| | || || || | | | Sbjct 10216 ATGCAGATTTTTGTGAAAACCCTAACTGGCAAAACCATAACTTTGGAGGTTGAGAGCTCA 10157 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || ||| ||||||||||| || || || ||||| || ||| Sbjct 10156 GACACAATAGATAATGTAAAGGCAAAGATTCAAGACAAAGAAGGGATCCCACCAGACCAA 10097 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | || || ||||| || || ||| | |||||| || || | | || |||||| Sbjct 10096 CAAAGACTCATCTTTGCTGGTAAGCAGCTTGAGGATGGTCGTACTCTTGCAGACTACAAC 10037 Query 22399 ATTCAAAAAGAATCCAC 22415 || ||||| ||||| || Sbjct 10036 ATCCAAAAGGAATCAAC 10020 >seq1 Length=111110 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||||| || || || ||||| |||| || || ||| | || || || || ||| | Sbjct 60417 AAAAATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATAACCCTAGAGGTTGAATC 60476 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | || || | ||| || | || || || ||||||||||| || || ||||| || Sbjct 60477 ATCGGACACAATCGACAATGTGAAGGCGAAGATCCAAGACAAGGAAGGAATCCCACCGGA 60536 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 ||| || ||||| || || ||||| || || | || || | || || ||||||| Sbjct 60537 TCAGCAGCGTCTGATCTTCGCCGGGAAGCAACTGGAAGACGGAAGGACACTCGCCGATTA 60596 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||| || ||||| || || | ||||| || | || || | |||||| Sbjct 60597 CAACATCCAGAAAGAGTCGACGCTTCATTTGGTGCTCCGTCTGAGAGGAGGT 60648 >seq683 Length=32930 Score = 86.0 bits (94), Expect = 5e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 22312 GACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAG 22371 ||||| ||||| || ||||| |||||||| | | |||||||| || ||||| ||||| Sbjct 24508 GACAAAGAGGGGATACCACCAGATCAACAGAGGTTGATATTTGCTGGTAAACAATTAGAA 24567 Query 22372 GATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTG 22431 ||| || || | | |||||||||||||| ||||| || || || || || |||||| Sbjct 24568 GATGGTCGAACTTTAGCTGATTACAACATTCAGAAAGAGTCTACAATTCACTTGGTTTTG 24627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419688048452650