Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq308 116 3e-21 seq2666 105 5e-18 seq3586 87.8 1e-12 >seq308 Length=205501 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||||||| | ||||| | || ||||||||||||||| | ||| || | | Sbjct 131391 ATGCAAATATTTGTGAAAACCCTCACTGGCAAAACCATTACCCTAGAAGTTGAGAGCTCT 131332 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || || | | || |||| || ||| || || || || | ||| ||||| Sbjct 131331 GACACCGTTGACAATGTTAAAGCTAAGATTCAAGACAAGGAAGGAATCCCTCCGGACCAA 131272 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||||| ||||||||||| ||||| || || ||| ||| | ||||||||||| Sbjct 131271 CAGAGACTCATCTTTGCTGGTAAACAGCTTGAGGATGGTCGCACTCTTGCCGATTACAAC 131212 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||| ||||| || |||||| |||| | ||| | ||||||| Sbjct 131211 ATCCAGAAAGAATCAACCCTTCATTTGGTGCTTCGTCTGAGAGGAGG 131165 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| |||| || | || || |||||||| || ||||| ||| | | Sbjct 130935 ATGCAGATTTTTGTTAAGACCCTTACCGGAAAAACCATAACTTTGGAAGTGGAGAGCTCG 130876 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || || | | || | ||| |||||| || || || || | ||| ||||| Sbjct 130875 GACACAGTCGACAATGTGAAGACAAAAATCCAAGACAAGGAAGGGATCCCTCCGGACCAA 130816 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||||| ||||| ||||| ||||| || || ||| |||| | || |||||||| Sbjct 130815 CAGAGACTCATCTTCGCTGGTAAACAGCTTGAGGATGGTCGAACTCTTGCTGATTACAAC 130756 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || |||||||| || || || || |||| | ||| || |||| || Sbjct 130755 ATCCAGAAGGAGTCAACCCTGCACTTGGTCCTTCGTCTAAGAGGTGG 130709 >seq2666 Length=20083 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | ||||| |||| ||||||||||| ||| | ||| || | | Sbjct 9508 ATGCAGATTTTTGTGAAAACCCTAACTGGCAAAACCATAACCCTAGAAGTTGAGAGCTCT 9449 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || || | | || | ||| || ||| ||| ||||| || | | | | ||||| Sbjct 9448 GACACCGTTGACAATGTCAAGGCCAAGATTCACGACAAAGAAGGGATCCAAGCAGACCAA 9389 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||||||||||| |||||||| ||||| |||||| | ||| | || || || || Sbjct 9388 CAGAGACTTATCTTCGCTGGCAAGCAACTTGAAGATGGTCACACTCTTGCAGACTATAAC 9329 Query 22014 ATTCAGAAGGAATCTACTCTTCA 22036 || || |||||||| || ||||| Sbjct 9328 ATCCAAAAGGAATCAACACTTCA 9306 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 ||||||| || || ||| ||||||| ||||||||||| |||||||| ||||| || Sbjct 9643 GATAAAGCAGGAGTCCCTCCGGACCAACAAAGACTTATCTTCGCTGGCAAGCAACTTGAG 9584 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTA 22046 ||| ||| | || ||||||||||| ||||| | || || |||||| | || || Sbjct 9583 GATGGTCGTACTCTTGCGGATTACAATATACAGAAAGGGTCAACACTTCATCTTGTGTTG 9524 Query 22047 CGTTTACGAGGAGG 22060 ||| | ||||| || Sbjct 9523 CGTCTTCGAGGTGG 9510 >seq3586 Length=17470 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || || || || ||||| || |||||| |||| || | || Sbjct 6221 ATGCAAATCTTTGTGAAGACTTTGACAGGCAAGACTATTACCTTGGAGGTTGAGAGCTCA 6280 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || ||||| || ||| || || || || | ||| ||||| Sbjct 6281 GACACAATTGATAATGTTAAGGCTAAGATTCAGGACAAGGAAGGGATCCCTCCGGACCAA 6340 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||||| ||||| ||||| ||||| || || ||| ||| |||| |||||||| Sbjct 6341 CAGAGACTCATCTTCGCTGGAAAACAGCTCGAGGATGGTCGGACTTTGGCTGATTACAAC 6400 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 || |||||||| || || || || |||| | ||| | || || ||| Sbjct 6401 ATCCAGAAGGAGTCGACCCTGCACTTGGTTCTTCGTCTTCGTGGTGGA 6448 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | ||||| |||| || |||||||||||| | || || | || Sbjct 5993 ATGCAGATCTTTGTCAAAACTCTAACAGGGAAAACCATTACCCTCGAGGTTGAGAGCTCA 6052 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| || || ||||||||||| | || |||| Sbjct 6053 GACACAATCGACAATGTCAAGGCTAAGATCCAAGATAAAGAGGGAATCCCACCGGACCAG 6112 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| |||||||| ||||| ||||| || || ||| || |||| || ||||| Sbjct 6113 CAGAGGCTTATCTTCGCTGGGAAACAGCTTGAGGATGGTCGCACACTGGCTGACTACAAC 6172 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||||||||| || ||||| | || || ||| | || || || Sbjct 6173 ATCCAGAAGGAATCAACCCTTCACCTTGTGTTGCGTCTTCGTGGTGG 6219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358090712114740