Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq144 141 2e-28 seq422 116 7e-21 >seq144 Length=115930 Score = 141 bits (156), Expect = 2e-28 Identities = 358/538 (67%), Gaps = 10/538 (2%) Strand=Plus/Plus Query 42408 TTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTG 42467 ||| ||||| || | || || ||||||||||| || ||||| || || ||||| || Sbjct 55655 TTCATCAAACACGTCCTCGCTTTCTTCGCCGCATCAGACGGTATCGTTTTAGAGAATCTC 55714 Query 42468 GCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGC-TTCTACGGCTTCCA 42526 || | | |||||| ||| || || || |||||||| ||| |||||||| ||||| Sbjct 55715 GCTTCACGATTCATGTCAGATGTTCAAGTCTCGGAGGCGCG-TGCTTTCTACGGATTCCA 55773 Query 42527 GATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCT 42586 ||| || || ||||| | || || ||| |||| || ||| | ||||||||| Sbjct 55774 GATCGCGATTGAGAATATTCATTCCGAGATGTATAGTCTCCTTCTCGATACGTACATCAA 55833 Query 42587 GGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAA 42646 ||| | ||| | | || ||| || || || || || || ||| || ||| Sbjct 55834 AGATAACAAAGAGAGAGATCATCTCTTCCGCGCGATTGAAACCATTCCTTGCGTCGCGAA 55893 Query 42647 GAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCT 42706 ||| || | |||||| | | |||||||| | | | ||| |||| || | | Sbjct 55894 GAAAGCACAGTGGGCGATGACTTGGATCGACGGATCTCA---AACCTTCGCTGAACGAAT 55950 Query 42707 GGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTG 42766 ||||| || | ||| || || ||||||||||| || |||| |||||||||||| Sbjct 55951 CGTAGCTTTCGCTTGCGTTGAAGGTATCTTCTTCTCCGGTAGCTTCTGCTCCATCTTCTG 56010 Query 42767 GCTCAAG-CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGG 42825 ||| ||| | ||| || ||||| || | |||||||| |||||| | ||| | | Sbjct 56011 GCTTAAGAAACGAGGACTC-ATGCCTGGTTTAACCTTCTCTAACGAATTGATCTCTCGAG 56069 Query 42826 ACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGC 42885 |||| || | || | || || || |||||||| | | || | | | ||| |||| Sbjct 56070 ACGAAGGCTTACACTGCGATTTCGCTTGCCTCCTCTACACG---CTCTTGAGGACGAAGC 56126 Query 42886 CCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTT 42943 || ||||||| || | | ||| || || ||||| |||||||||| ||||| Sbjct 56127 TGACGGAGGAGCGCGTGAAGTCAATCGTCTGCGACGCCGTCGAGATCGAGAGAGAGTT 56184 >seq422 Length=101449 Score = 116 bits (128), Expect = 7e-21 Identities = 297/448 (66%), Gaps = 7/448 (2%) Strand=Plus/Minus Query 42408 TTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTG 42467 ||| ||||| || |||| |||||||||||||| || |||||||| || ||||| || Sbjct 44207 TTCATCAAACACGTACTCGCCTTCTTCGCCGCATCAGACGGCATCGTTTTAGAGAATCTA 44148 Query 42468 GCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAG 42527 | ||| | |||||| || || ||| || ||||| || ||| ||||| || || Sbjct 44147 TCAACCCGATTCATGTCCGATGTTCAGATCTCCGAGGCTCGTGCCTTTTACGGATTTCAA 44088 Query 42528 ATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTG 42587 || || || ||||| | ||||||||| |||| || ||| | || || ||| Sbjct 44087 ATCGCGATTGAGAATATTCACTCTGAGATGTATAGTCTCCTTCTCGATACTTATATCAAA 44028 Query 42588 GATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAG 42647 ||| | ||| | | || ||| || || || || || || || | | |||| Sbjct 44027 GATAACAAAGAGAGAGATCATCTCTTCCGCGCAATTGAAACCATTCCTTGTGTAACGAAG 43968 Query 42648 AAGGCGGACTGGGCGCTCAACTGGATCGA-GAGTCCCGACGCAACGTTCGGCGAGAGGCT 42706 || || | |||||| | || |||||||| | || | | || |||| || | | Sbjct 43967 AAAGCACAATGGGCGATGAAATGGATCGACGGATCTCAAAGC----TTCGCTGAACGAAT 43912 Query 42707 GGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTG 42766 || || ||| | ||| || || ||||||||||| || ||| || || ||||| Sbjct 43911 CGTGGCTTTTGCTTGCGTTGAAGGTATCTTCTTCTCCGGTAGCTTTTGTTCTATTTTCTG 43852 Query 42767 GCTCAAG-CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGG 42825 | | ||| | |||| | ||||| ||||| || ||||| |||||||| ||| || | Sbjct 43851 GTTGAAGAAACGAGGT-TTAATGCCTGGACTTACTTTCTCCAACGAACTGATCTCAAGAG 43793 Query 42826 ACGAGGGGCTGCATAGGGACTTTGCCTG 42853 |||| || || ||| | || || || || Sbjct 43792 ACGAAGGTCTTCATTGTGATTTCGCTTG 43765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944247008885600