Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq1002 102 7e-17 seq210 87.8 2e-12 >seq1002 Length=111223 Score = 102 bits (112), Expect = 7e-17 Identities = 188/272 (69%), Gaps = 8/272 (3%) Strand=Plus/Minus Query 20249 TGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCC 20308 ||||| || || | || | ||||| || |||||||||||| | || || | |||| Sbjct 96162 TGAGCGAGAATGCATGTAAGAAGGGAGTATGAGGCAATGTTAAACGTTACACCGAGACCC 96103 Query 20309 ATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGA 20368 || || | || | |||||||| ||||| ||||| || || | || ||||| || || Sbjct 96102 ATATCAGCTGAGCGCTGATACATTTGACATGAAAGTTCTCCATTCGCAACATAGAACTGT 96043 Query 20369 CATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACAC 20428 |||| ||| || || ||||| ||||||| | | || | |||||||| || || Sbjct 96042 GCAAACATGTGGCATGGAGGAAGTGCCATCAGCTTAAGATCAGGAGGGTTCCAAGCTGAC 95983 Query 20429 ATAATGATTCTTCTATCGTGCGGATTATTTTTTAT----TAAATCCACAATGTACGACAA 20484 || || |||| || ||| | ||||| || || || | ||| || || || ||| Sbjct 95982 ATTATAATTCGTCGATCATCAGGATTGTTCTTGATCTTGTTAAT-TAC-ATCTA--ACAG 95927 Query 20485 TTGGTCAAACCCCTGGCCTGTATAGTCAGCAT 20516 || ||||| || ||||| ||||| ||||||| Sbjct 95926 CTGATCAAATCCTTGGCCAGTATAATCAGCAT 95895 >seq210 Length=153681 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 20171 AGTGGCTCTATATGCGTTTTGTAGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCG 20230 || ||| || ||| ||||||| | || ||||| || | || ||||| || || Sbjct 139844 AGAGGCCTTACATGATTTTTGTACACATGAGCATCCCCAATAACATGGATAAAATCACCA 139785 Query 20231 GGTCTAAGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTA 20290 || |||| || || ||||| |||||| |||| | || || ||| ||||||||| Sbjct 139784 GGAACAAGATCACACACGTGAGCGAGCATACAAGTAAGAAGAGAGTAGGAAGCAATGTTA 139725 Query 20291 AAAGGAACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCG 20350 || || || || | |||||||| | || | |||||||| ||||| || || || || Sbjct 139724 AACGGTACACCAAGGCCCATGTCCGCTGAACGCTGATACATTTGACATGAGAGTTCTCCT 139665 Query 20351 TCAGCTACATAAAATTGA 20368 || || |||||||| ||| Sbjct 139664 TCTGCCACATAAAACTGA 139647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441329710980400