Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1 150 4e-31 seq863 136 9e-27 seq275 131 4e-25 seq308 107 5e-18 seq516 102 2e-16 seq3586 89.7 1e-12 >seq1 Length=111110 Score = 150 bits (166), Expect = 4e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || | ||||| ||| ||||| ||||| || || |||||||| || | ||||||| Sbjct 60632 AGCACCAAATGAAGCGTCGACTCTTTCTGGATGTTGTAATCGGCGAGTGTCCTTCCGTCT 60573 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || | ||| || || ||||||||||||||||| ||| |||||||||||| || || Sbjct 60572 TCCAGTTGCTTCCCGGCGAAGATCAGACGCTGCTGATCCGGTGGGATTCCTTCCTTGTCT 60513 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 ||||| ||||| ||||| || || || | || ||||| || || || || |||||| Sbjct 60512 TGGATCTTCGCCTTCACATTGTCGATTGTGTCCGATGATTCAACCTCTAGGGTTATCGTC 60453 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| || || || || ||||| ||||||||| Sbjct 60452 TTCCCCGTTAGGGTTTTCACGAAGATCTGCATT 60420 >seq863 Length=117140 Score = 136 bits (150), Expect = 9e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| ||||| | || || ||||||| ||| ||| || ||||| || |||||||| Sbjct 77634 TCCACCACGGAGACGGAGCACCAGATGAAGCGTCGATTCCTTCTGGATGTTGTAGTCGGC 77693 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||| || || |||||||| | ||||| || ||||| |||| ||||| || ||| Sbjct 77694 GAGAGTACGGCCGTCTTCGAGCTGTTTCCCGGCGAAAATCAATCGCTGCTGGTCCGGTGG 77753 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 |||||| || || || ||||| |||||||| || || || || | || || || || Sbjct 77754 GATTCCCTCCTTGTCTTGGATCTTCGCTTTGACATTGTCGATGGTGTCAGAGGACTCGAC 77813 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| || || || || || ||||| |||||||| Sbjct 77814 CTCAAGGGTGATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 77861 >seq275 Length=143682 Score = 131 bits (144), Expect = 4e-25 Identities = 146/194 (75%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || ||||| || || || ||||| | ||||| || || || | || ||||| |||||| Sbjct 123636 TCCTTTTGAATGTTGTAATCGGCCAAGGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAG 123577 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || |||||||| || || || ||||| ||||||||||| || ||||| ||||| Sbjct 123576 ATGAGACGCTGCTGGTCCGGAGGAATACCTTCCTTATCCTGGATCTTGGCTTTGACGTTG 123517 Query 288403 TCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || |||| || |||| || ||||| || ||||| ||||||||||| |||||||| Sbjct 123516 TCAATAGTGTCAGAGCTC---TCGACTTCAAGGGTGATTGTCTTCCCGGTGAGAGTCTTC 123460 Query 288460 ACGAATATCTGCAT 288473 |||||||| ||||| Sbjct 123459 ACGAATATTTGCAT 123446 Score = 127 bits (140), Expect = 5e-24 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || || || || | || | ||| ||| || |||||||| ||||| || Sbjct 139098 CCACCACGAAGCCTGAGAACCAAGTGGAGGGTGGATTCCTTCTGGATATTGTAGTCAGCC 139039 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || ||||| || || || ||||| |||||||| || | ||| ||| || Sbjct 139038 AAAGTACGGCCGTCCTCCAACTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGAGGA 138979 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 || ||||| ||||||||||| || || || ||||| || || | || ||| ||| Sbjct 138978 ATACCTTCCTTATCCTGGATCTTGGCCTTAACGTTGTCGATGGTGTCAGAGCT---TTCC 138922 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| ||||| ||||| |||||||| ||||| |||||||| Sbjct 138921 ACCTCGAGGGTGATGGTCTTTCCGGTGAGAGTCTTAACGAAGATCTGCAT 138872 Score = 107 bits (118), Expect = 5e-18 Identities = 141/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || |||||||| || ||||| | || || || || || | || ||||| |||||| Sbjct 139746 TCCTTCTGGATATTGTAATCGGCCAAGGTACGACCATCCTCAAGCTGCTTTCCGGCGAAG 139687 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| | ||| || |||||| || ||||| || ||||| || ||||||||||| Sbjct 139686 ATCAACCTCTGCTGGTCCGGTGGGATACCCTCTTTGTCTTGGATCTTGGCTTTCACGTTG 139627 Query 288403 TCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || | || |||| || || ||||| || || ||||| || |||| |||||| Sbjct 139626 TCAATGGTGTCAGAGCTC---TCCACCTCGAGGGTAATGGTCTTACCAGTCAAGGTCTTG 139570 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 139569 ACGAAGATCTGCAT 139556 Score = 104 bits (114), Expect = 6e-17 Identities = 140/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || ||||| || ||||| | || || || || || | || ||||| |||||| Sbjct 123408 TCCTTCTGAATATTGTAATCGGCCAAGGTACGACCATCCTCAAGCTGCTTTCCGGCGAAG 123349 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| | ||| || |||||| || ||||| || ||||| || ||||||||||| Sbjct 123348 ATCAACCTCTGCTGGTCCGGTGGGATACCCTCTTTGTCTTGGATCTTGGCTTTCACGTTG 123289 Query 288403 TCTATAGAATCG---CTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || | ||| ||| || || ||||| || || ||||| || |||| |||||| Sbjct 123288 TCAATGGTGTCGGAGCTC---TCCACCTCGAGGGTAATGGTCTTACCAGTCAAGGTCTTG 123232 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 123231 ACGAAGATCTGCAT 123218 Score = 104 bits (114), Expect = 6e-17 Identities = 140/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| || | || || ||||| || | ||| ||||| |||||| Sbjct 139518 TCCTTCTGGATGTTGTAGTCAGCCAAAGTACGGCCGTCCTCAAGTTGCTTTCCGGCGAAG 139459 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| | ||| || ||||||||| || || || |||||||| ||||||||||| Sbjct 139458 ATCAATCTCTGCTGGTCCGGTGGGATTCCCTCCTTGTCTTGGATTTTAGCTTTCACGTTG 139399 Query 288403 TCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || | || ||| || || || | ||||| ||||| ||||||| ||||| Sbjct 139398 TCGATGGTGTCAGAACTC---TCCACCTCCAAAGTGATAGTCTTTCCGGTCAAGGTCTTA 139342 Query 288460 ACGAATATCTGCAT 288473 ||||| || ||||| Sbjct 139341 ACGAAGATTTGCAT 139328 >seq308 Length=205501 Score = 107 bits (118), Expect = 5e-18 Identities = 163/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||||||||| | || || || |||| || ||||||||||| || ||||| || Sbjct 130480 TCCACCGCGGAGACGGAGAACAAGGTGAAGAGTCGACTCTTTTTGGATGTTGTAGTCTGC 130539 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || || || || || | || || || || ||||| || | |||||| ||| Sbjct 130540 AAGAGTACGACCATCCTCAAGCTGCTTACCAGCAAAGATGAGTCTCTGTTGGTCTGGTGG 130599 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTC 288422 ||| |||||||| || || || || || ||||| || |||| || || |||| || Sbjct 130600 GATCCCTTCTTTGTCTTGAATCTTTGCCTTCACATTATCTACAGTGTCTGAGCTC---TC 130656 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | || || || || ||||| || |||||||| || |||||||| Sbjct 130657 AACCTCCAAAGTTATGGTTTTTCCGGTTAGGGTCTTGACAAAAATCTGCAT 130707 Score = 102 bits (112), Expect = 2e-16 Identities = 165/235 (70%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| |||||||| || | ||| || || |||| || || || ||||| || || | Sbjct 131389 CATG-CCACCGCGAAGACGAAGGACAAGGTGAAGTGTTGACTCCTTCTGGATGTTGTAAT 131447 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | || || || || || || || | || || || || ||||| || | ||| || Sbjct 131448 CCGCAAGAGTCCGGCCATCCTCGAGCTGCTTACCAGCAAAGATGAGCCTCTGCTGGTCCG 131507 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCG 288418 ||||||||||||||||| ||||| || || || ||||| || |||| || ||| Sbjct 131508 GAGGGATTCCTTCTTTATCTTGGATCTTTGCCTTGACGTTATCAATAGTGTCAGAGCT-- 131565 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| || || || || || |||||||| || |||||||| || || || ||||| Sbjct 131566 -TTCAACCTCAAGAGTAATGGTCTTCCCTGTAAGAGTCTTAACAAAGATTTGCAT 131619 Score = 98.7 bits (108), Expect = 2e-15 Identities = 163/233 (70%), Gaps = 12/233 (5%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| |||||||| || || ||||| | || || || || || || || || || Sbjct 130937 CCACCACGGAGTCTCAGCACAAGATGGAGGGTTGACTCCTTCTGAATGTTGTAATCAGCA 130996 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG- 288365 || ||||| || ||||| | || || || ||||| || || | |||||| ||||| Sbjct 130997 AGTGTGCGACCATCTTCGAGCTGCTTGCCGGCGAATATGAGTCTCTGTTGG---TCTGGT 131053 Query 288366 --GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGAT 288420 ||| ||||| || || ||||| || || || || || || | | ||| ||| | Sbjct 131054 GAGATCCCTTCCTTGTCTTGGATCTTGGCCTTTACATTGTCAACGGTATCTGAGCT---T 131110 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || | || || || || ||||| || |||||||||||||||||||| Sbjct 131111 TCAACCTCCAAAGTTATGGTTTTACCGGTAAGGGTCTTGACGAATATCTGCAT 131163 Score = 84.2 bits (92), Expect = 5e-11 Identities = 149/216 (69%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 288261 AAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTC 288320 ||| || | ||||| || |||||| ||||| || || ||||| || ||||| || || Sbjct 131179 AAGCACCAAATGAAGGGTTGATTCTTTCTGGATGTTGTAATCGGCAAGAGTGCGACCATC 131238 Query 288321 TTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATC 288380 || | ||||| || || ||||| || | |||||| ||||||||||| || || Sbjct 131239 CTCAAGCTGTTTACCAGCAAAGATGAGTCTCTGTTGGTCCGGAGGGATTCCTTCCTTGTC 131298 Query 288381 CTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCTACTTCGAGCGTGAT 288437 || || || ||||| || || || | | || |||| || ||||| || || || Sbjct 131299 TTGAATCTTAGCTTTAACATTGTCAACGGTGTCAGAGCTC---TCAACTTCTAGGGTAAT 131355 Query 288438 CGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || || || || ||||| ||||| Sbjct 131356 GGTTTTGCCAGTGAGGGTTTTCACAAATATTTGCAT 131391 >seq516 Length=37039 Score = 102 bits (112), Expect = 2e-16 Identities = 165/235 (70%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| |||||||| || | ||| || || |||| || || || || || || || | Sbjct 10214 CATG-CCACCGCGAAGACGAAGGACAAGGTGAAGTGTTGACTCCTTCTGAATGTTGTAAT 10272 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | || || ||||| || ||||| | || || || ||||| || || | ||||| Sbjct 10273 CAGCAAGAGTGCGACCATCTTCGAGCTGCTTGCCGGCGAATATGAGTCTTTGTTGGTCTG 10332 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCG 288418 |||||| ||||| || || ||||| || || ||||| || || || | ||| ||| Sbjct 10333 GTGGGATCCCTTCCTTGTCTTGGATCTTGGCCTTCACATTGTCAATGGTATCTGAGCT-- 10390 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| || || | || || || || ||||| || |||||||||||||||||||| Sbjct 10391 -TTCAACCTCCAAAGTTATGGTTTTACCGGTAAGGGTCTTGACGAATATCTGCAT 10444 Score = 98.7 bits (108), Expect = 2e-15 Identities = 161/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||||||||| | || || ||||||| || ||||||||||| || || || || Sbjct 9761 TCCACCGCGGAGACGGAGAACAAGATGAAGAGTCGACTCTTTTTGGATGTTGTAATCCGC 9820 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | |||| || ||||||| || || || || ||||| || | ||| || | | Sbjct 9821 TAAAATGCGACCATCTTCTAGCTGCTTCCCCGCAAAGATAAGCCTCTGCTGGTCCGGTTG 9880 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTC 288422 ||| |||||||| || || || || || || || || || | | ||| ||| || Sbjct 9881 GATCCCTTCTTTGTCATGAATCTTTGCCTTGACATTGTCAACCGTATCAGAACTC---TC 9937 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || |||| ||||| || |||| ||||||||| || |||||||| Sbjct 9938 GACCTCAAGAATGATGGTCTTGCCCGTCAAAGTCTTGACAAAAATCTGCAT 9988 >seq3586 Length=17470 Score = 89.7 bits (98), Expect = 1e-12 Identities = 161/233 (69%), Gaps = 12/233 (5%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||| | ||| || || || | || || || ||||| || ||||| ||| Sbjct 5991 CCACCTCTGAGACGAAGGACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCG 5932 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGAC---GCTGTTGAGAATCT 288363 || ||||| || || || | || || || |||||||| || | |||| | | | Sbjct 5931 AGTGTGCGACCATCCTCAAGCTGCTTACCAGCGAAGATGAGTCTTTGCTGGTCCGGA--- 5875 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGAT 288420 ||||||||||| || ||||| || || || || || || || |||| || |||| Sbjct 5874 GGGATTCCTTCCTTGTCCTGAATCTTAGCCTTGACATTATCGATAGTGTCTGAGCTC--- 5818 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || | ||| || || || ||||| || ||||| || || |||||||| Sbjct 5817 TCGACCTCCAACGTAATGGTTTTGCCGGTGAGGGTCTTAACAAAGATCTGCAT 5765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179536357145180