Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq144 143 6e-29 seq499 91.5 3e-13 >seq144 Length=115930 Score = 143 bits (158), Expect = 6e-29 Identities = 565/876 (64%), Gaps = 27/876 (3%) Strand=Plus/Plus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 || || || || || || | || ||||| ||||||||||| || | ||| | || ||| Sbjct 55526 TTTCCGATTCACTACCCACAGATCTGGGAGATGTATAAGAAAGCCGAAGCATCGTTCTGG 55585 Query 242935 ACCACCGAGGAAGTTCCTCTGAACGCA-GACGTCGTCGACTGGCGCGAGAAACTCAATGA 242993 ||| |||| ||||| ||| | | || |||| ||| ||| ||||| || || || Sbjct 55586 ACCGCCGAAGAAGTCGATCT-ATCACAAGACGGACGCGATTGG---GAGAATCTAAACGA 55641 Query 242994 CGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGATGGTATTGT 243053 || |||||||| |||||||||||| | || | ||| ||||| | || || ||||| || Sbjct 55642 CGGTGAACGTCACTTCATCAAACACGTCCTCGCTTTCTTCGCCGCATCAGACGGTATCGT 55701 Query 243054 GATGGAAAATCTGCAGACCAACTTTAGTGT-GGAAGTAACGGTTCCAGAGGCACGGCAAT 243112 | || ||||| | || || ||| || || || | ||||| || | Sbjct 55702 TTTAGAGAATCT-CGCTTCACGATTCATGTCAGATGTTCAAGTCTCGGAGGCGCGTGCTT 55760 Query 243113 TTTATGCTTACCAAA----CATTCAACGAATCTATCCATTCTGAACAATATGCTCTTCTT 243168 | || | | ||| | ||| | ||| ||| ||||| || ||| ||| ||| Sbjct 55761 TCTACGGATTCCAGATCGCGATTGA--GAA--TATTCATTCCGAGATGTATAGTCTCCTT 55816 Query 243169 ATCGACGCGCTTATTTCAGATGAACAAGAGCGAAACGAGCTTTTCGACGCCATCGAAAAC 243228 |||| || || |||| | ||||| || | | || ||| ||| || |||| | Sbjct 55817 CTCGATACGTACATCAAAGATAACAAAGAGAGAGATCATCTCTTCCGCGCGATTGAAACC 55876 Query 243229 ATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTAGAACCCGG---TAAA 243285 ||||| || || || ||| | ||||| || ||| | || ||| | || Sbjct 55877 ATTCCTTGCGTCGCGAAGAAAGCACAGTGGGCGATGACTTGGATCGA---CGGATCTCAA 55933 Query 243286 TCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGT 243345 | || ||||| || |||| || | | |||||||||||||| | || ||||| || Sbjct 55934 ACCTTCGCTGAACGAATCGTAGCTTTCGCTTGCGTTGAAGGTATCTTCTTCTCCGGTAGC 55993 Query 243346 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAAC 243405 |||||| ||||||| ||||| ||| ||| | |||||||| | | |||||| Sbjct 55994 TTCTGCTCCATCTTCTGGCTTAAGAAACGAGGACTCATGCCTGGTTTAACCTTCTCTAAC 56053 Query 243406 GAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAG 243465 || || ||| ||| ||||| ||| | ||| | |||| | || | || | | Sbjct 56054 GAATTGATCTCTCGAGACGAAGGCTTACACTGCGATTTCGCTTGCCTCCTCTA---CACG 56110 Query 243466 CTC--CAGAAC-AAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTGAA 243522 ||| || || ||||| | || || || |||| || || || || || Sbjct 56111 CTCTTGAGGACGAAGCTGACGGAGGAGCGCGTGAAGTCAATCGTCTGCGACGCCGTCGAG 56170 Query 243523 AACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAA 243582 | ||| | || || | |||||||| |||| ||| | | |||| |||||| ||| Sbjct 56171 ATCGAGAGAGAGTTTGTGTGCGACGCGCTTCCTTGCGCGTTGGTTGGGATGAACCGTGAG 56230 Query 243583 CTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAG 243642 | ||| | ||||| || || || || || || | |||| |||||||| || | Sbjct 56231 TTGATGAGTCAGTATATTGAGTTTGTTGCGGATAGACTTTTGGGTGCGCTTGGGTACGGT 56290 Query 243643 AAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAA 243702 || |||||| | || || |||| | ||||| || || |||||||| || ||| Sbjct 56291 AAGGTGTACGGTGTGACTAATCCGTTTGATTGGATGGAACTTATCTCGCTTCAGGGTAAA 56350 Query 243703 ACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAA 243738 || ||||||||||| || ||||| ||||||| ||| Sbjct 56351 ACGAACTTCTTCGAGAAACGTGTTGGTGATTACCAA 56386 >seq499 Length=107983 Score = 91.5 bits (100), Expect = 3e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 30987 TGCGAATTGCTTCTTCTTCCTCGGGTGTGATCTCGTTTTCGATACCGAACACTTTTCGAA 31046 |||||| ||||||||||||| ||||||| ||||| | ||| ||| | | |||| Sbjct 38835 TGCGAACCTCTTCTTCTTCCTCTGGTGTGAAGTCGTTCTTGATGTTGAAGGTTGTGCGAA 38894 Query 31047 TCTCTTCCGGAGtttttccttttattttttCAGCGATAGCTTGACATAGAACATCAAGCA 31106 ||||||| |||||||| ||||| || | ||||| | | |||||| || ||||| | Sbjct 38895 TCTCTTCTGGAGTTTTGCCTTTGATCATATCAGCCACTGTCTGACATGTAAGGTCAAGTA 38954 Query 31107 TACTCTTTATGTTCAAGAAATTCGC 31131 | |||| ||||||| ||||||| Sbjct 38955 GATTCTTGATGTTCAGATAATTCGC 38979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102769639623500