Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq422 111 2e-19 seq144 105 8e-18 seq236 82.4 9e-11 >seq422 Length=101449 Score = 111 bits (122), Expect = 2e-19 Identities = 142/195 (73%), Gaps = 3/195 (2%) Strand=Plus/Plus Query 126059 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCC 126118 || ||||| ||||| | ||||| ||||| || ||||| ||||| ||||| | ||| Sbjct 43780 TGAAGACCTTCGTCTCTTGAGATCAGTTCGTTGGAGAAAGTAAGTCCAGGCATTAAACCT 43839 Query 126119 CGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACAC 126178 || ||||||||||||||||| | |||||| ||| ||||||||||| || || || || Sbjct 43840 CGTTTCTTCAACCAGAAAATAGAACAAAAGCTACCGGAGAAGAAGATACCTTCAACGCAA 43899 Query 126179 GCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGCC 126238 || || || | || || ||||| ||| | || | ||| | ||| ||||||||| Sbjct 43900 GCAAAAGCCACGATTCGTTCAGCGAAGCTTTGAGA---TCCGTCGATCCATTTCATCGCC 43956 Query 126239 CACTGCGCCTTTTTC 126253 || || || || ||| Sbjct 43957 CATTGTGCTTTCTTC 43971 >seq144 Length=115930 Score = 105 bits (116), Expect = 8e-18 Identities = 183/262 (70%), Gaps = 7/262 (3%) Strand=Plus/Minus Query 126065 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTC 126124 || ||||| || ||||| | ||| || |||||| | || |||||||| || || ||| Sbjct 56076 CCTTCGTCTCGAGAGATCAATTCGTTAGAGAAGGTTAAACCAGGCATGAGTCCTCGTTTC 56017 Query 126125 TTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAAC 126184 || | |||||| || | || || ||| ||||||||||| || || || || ||||| Sbjct 56016 TTAAGCCAGAAGATGGAGCAGAAGCTACCGGAGAAGAAGATACCTTCAACGCAAGCGAAA 55957 Query 126185 GCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGCCCACTGC 126244 || | || || ||||| |||| | || | ||| | ||| ||||||||||||| Sbjct 55956 GCTACGATTCGTTCAGCGAAGGTTTGAGA---TCCGTCGATCCAAGTCATCGCCCACTGT 55900 Query 126245 GCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCT-TCT-TTTCTG 126302 || || ||| ||| || || | ||| | ||||| ||||| | | ||| | | || Sbjct 55899 GCTTTCTTCGCGACGCAAGGAATGGTTTCAATCGCGCGGAAGAGATGATCTCTCTCTTTG 55840 Query 126303 ATGGATCTTTGATGTACTTATC 126324 | ||||||||||||| |||| Sbjct 55839 TT--ATCTTTGATGTACGTATC 55820 >seq236 Length=170583 Score = 82.4 bits (90), Expect = 9e-11 Identities = 186/278 (67%), Gaps = 4/278 (1%) Strand=Plus/Minus Query 10876 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGG 10935 ||| ||||||||||||||||| | ||||| ||||| ||||| | |||||||| | Sbjct 103730 AAATCCATCCATCTCAGTCAACAACTGATTAATGGTCTGTTCTCTCTCATCATTTCC--T 103673 Query 10936 CATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 10993 | | ||| || || | | ||| | || || || ||||| ||||| ||||| || || Sbjct 103672 CCTCCCATCCCAGCTCCTCTCTGCCTCCCCACAGCATCAATCTCATCAATGAATACAATG 103613 Query 10994 CACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCC 11053 || || || | || ||||| | ||||| ||||| ||||| |||||| Sbjct 103612 CAAGGAGCTTTCGCCTTAGCCTTCTCAAACAAATCTCTAACTCTAGATGCACCAACACCC 103553 Query 11054 ACAAACATTTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCC 11113 ||||| | || ||||| | | || | || || ||| || || | ||| || Sbjct 103552 ACAAAAAGCTCAACAAACTCTGAAGCCGCGCAGGAGAAGAATGGTACTCCTGCTTCTCCA 103493 Query 11114 GCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGG 11151 || | |||| || | ||||||||| ||||| ||||| Sbjct 103492 GCCACTGCTCTAGCCAAGAGGGTCTTACCCGTACCAGG 103455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597295283354800