Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq308 107 1e-18 seq1 104 2e-17 seq683 87.8 1e-12 seq3586 84.2 2e-11 seq516 84.2 2e-11 seq275 82.4 5e-11 >seq308 Length=205501 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || ||||||||||| || ||||| || |||||||||||| ||| | | | || || Sbjct 131183 ACCAAATGAAGGGTTGATTCTTTCTGGATGTTGTAATCGGCAAGAGTGCGACCATCCTCA 131242 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | ||||| ||||| | || | | ||||||||| || |||||||||||||| | Sbjct 131243 AGCTGTTTACCAGCAAAGATGAGTCTCTGTTGGTCCGGAGGGATTCCTTCCTTGTCTTGA 131302 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || ||| ||| | || | || || | || || |||| |||||||||||| Sbjct 131303 ATCTTAGCTTTAACATTGTCAACGGTGTCAGAGCTCTCAACTTCTAGGGTAATGGTTTTG 131362 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || ||||| ||||| |||||||| Sbjct 131363 CCAGTGAGGGTTTTCACAAATATTTGCAT 131391 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | ||| | || | ||| ||||| || || || || ||||||||||| Sbjct 130937 CCACCACGGAGTCTCAGCACAAGATGGAGGGTTGACTCCTTCTGAATGTTGTAATCAGCA 130996 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | ||||| | || ||||| ||| |||| | | ||||||||| || Sbjct 130997 AGTGTGCGACCATCTTCGAGCTGCTTGCCGGCGAATATGAGTCTCTGTTGGTCTGGTGAG 131056 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| || ||| |||||| | || | ||||| |||| || Sbjct 131057 ATCCCTTCCTTGTCTTGGATCTTGGCCTTTACATTGTCAACGGTATCTGAGCTTTCAACC 131116 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || ||||||||||| || || || || || || || |||||| Sbjct 131117 TCCAAAGTTATGGTTTTACCGGTAAGGGTCTTGACGAATATCTGCATA 131164 >seq1 Length=111110 Score = 104 bits (114), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || |||||||| || || ||||| || |||||||||||| ||| | || ||||||| Sbjct 60629 ACCAAATGAAGCGTCGACTCTTTCTGGATGTTGTAATCGGCGAGTGTCCTTCCGTCTTCC 60570 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | ||| || || ||| | |||| |||||| || || ||| |||||||||||||| Sbjct 60569 AGTTGCTTCCCGGCGAAGATCAGACGCTGCTGATCCGGTGGGATTCCTTCCTTGTCTTGG 60510 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTAT-TTTCTACGTCTAAGGTAATGGTTTT 15146 || || || ||| | || || || || | || ||| || |||| ||| || || || Sbjct 60509 ATCTTCGCCTTCACATTGTCGATTGTGTC-CGATGATTCAACCTCTAGGGTTATCGTCTT 60451 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15180 || || || ||||| || || || ||||| ||| Sbjct 60450 CCCCGTTAGGGTTTTCACGAAGATCTGCATTTTT 60417 >seq683 Length=32930 Score = 87.8 bits (96), Expect = 1e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCT 15008 ||||||| | || ||||| || |||| ||||| ||||| || ||||||||||| ||| Sbjct 24641 CCACCTCTAAGCCTCAAAACCAAGTGAATTGTAGACTCTTTCTGAATGTTGTAATCAGCT 24582 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 | | ||| | |||||||||||||| ||||| ||||||| | |||||| || ||| Sbjct 24581 AA-AGTTCGACCATCTTCTAATTGTTTACCAGCAAATATCAACCTCTGTTGATCTGGTGG 24523 Query 15069 AATTCCTTCCTTGTC 15083 || || || ||||| Sbjct 24522 TATCCCCTCTTTGTC 24508 >seq3586 Length=17470 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| |||| | ||| || || ||||| || ||||| || |||||||||||| Sbjct 5535 CCACCTCTTAATCGGAGAACCAAGTGGAGGGTTGATTCTTTCTGGATGTTGTAATCGGCC 5476 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | ||||||| ||||| || ||| | ||||| | || || || ||| Sbjct 5475 AAGGTACGGCCATCTTCTAGCTGTTTTCCGGCGAAGATCAACCTTTGCTGATCCGGAGGA 5416 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 || |||||||| || ||| ||||| || ||| | || || ||||| | || || Sbjct 5415 ATGCCTTCCTTATCCTGAATCTTTGC-CTTAACATTGTCGATGGTATCAGAGCTCTCGAC 5357 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | || ||||| || || || || ||||| || |||| |||||| Sbjct 5356 ATCGAGAGTGATGGTCTTGCCAGTGAGTGTTTTCACGAAAACTTGCAT 5309 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| || || ||||| || || || || ||||||||||| | | | | | || || Sbjct 6430 AACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGCCAAAGTCCGACCATCCTC 6371 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | ||||| |||||| | || | | ||||||||| || || ||||||||||| Sbjct 6370 GAGCTGTTTTCCAGCGAAGATGAGTCTCTGTTGGTCCGGAGGGATCCCTTCCTTGTCCTG 6311 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||| || || ||| | || || || || | || || || |||||||| || || Sbjct 6310 AATCTTAGCCTTAACATTATCAATTGTGTCTGAGCTCTCAACCTCCAAGGTAATAGTCTT 6251 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||||| ||| || ||||| ||||||||| Sbjct 6250 GCCTGTCAAAGTCTTCACAAAGATTTGCATA 6220 >seq516 Length=37039 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAAT-CGCTGAGAATTCTCGCGTCTT 15025 ||| | |||||| || || |||||||| |||||||||| |||| | ||| | | |||| Sbjct 9779 AACAAGATGAAGAGTCGACTCTTTTTGGATGTTGTAATCCGCT-AAAATGCGACCATCTT 9837 Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGT-CGTTTGGAATTCCTTCCTTGTCA 15084 ||| || || || || | || | | ||| |||| || |||| || ||||| |||||| Sbjct 9838 CTAGCTGCTTCCCCGCAAAGATAAGCCTCTGCTGGTCCGGTTGG-ATCCCTTCTTTGTCA 9896 Query 15085 CAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGT 15143 ||| ||||| || ||| | || | ||||| | | || || || | | ||||| Sbjct 9897 TGAATCTTTGC-CTTGACATTGTCAACCGTATCAGAACTCTCGACCTCAAGAATGATGGT 9955 Query 15144 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || |||| ||| || |||||||| ||||| Sbjct 9956 CTTGCCCGTCAAAGTCTTGACAAAAATCTGCAT 9988 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||| || || || || || ||||||||||| ||| | | | ||||| | || Sbjct 10242 TGAAGTGTTGACTCCTTCTGAATGTTGTAATCAGCAAGAGTGCGACCATCTTCGAGCTGC 10301 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 ||||| ||| |||| | | |||||||| ||| || ||||||||||| || ||| Sbjct 10302 TTGCCGGCGAATATGAGTCTTTGTTGGTCTGGTGGGATCCCTTCCTTGTCTTGGATCTTG 10361 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| | || || ||||| |||| || || || || ||||||||||| || Sbjct 10362 GCCTTCACATTGTCAATGGTATCTGAGCTTTCAACCTCCAAAGTTATGGTTTTACCGGTA 10421 Query 15154 AGAGTTTTTACAAAAATTTGCATA 15177 || || || || || || |||||| Sbjct 10422 AGGGTCTTGACGAATATCTGCATA 10445 >seq275 Length=143682 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || || ||||||||||| || || ||||| |||||||||||| | | | | || Sbjct 123657 AACACCAAATGAAGGGTTGACTCCTTTTGAATGTTGTAATCGGCCAAGGTGCGACCATCC 123598 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || | || || |||||| | || | |||||| ||||| ||||| |||||||| || Sbjct 123597 TCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATACCTTCCTTATCC 123538 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 || ||| ||| || | || ||||| || | || || || | ||| || || Sbjct 123537 TGGATCTTGGCTTTGACGTTGTCAATAGTGTCAGAGCTCTCGACTTCAAGGGTGATTGTC 123478 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || ||||| || || || ||||||||| Sbjct 123477 TTCCCGGTGAGAGTCTTCACGAATATTTGCATA 123445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357357981865850