Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq275 116 3e-21 seq3586 111 1e-19 seq863 111 1e-19 seq2666 100 3e-16 seq516 95.1 1e-14 >seq275 Length=143682 Score = 116 bits (128), Expect = 3e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || || | |||||| | ||| || ||||| |||||||| || || |||||| Sbjct 123675 ATACCTCCACGAAGACGCAACACCAAATGAAGGGTTGACTCCTTTTGAATGTTGTAATCG 123616 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| || | || ||||| ||| | || | || ||||||||||| Sbjct 123615 GCCAAGGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGA 123556 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| ||||| ||||| || || || ||||| || | || | ||||| || ||| Sbjct 123555 GGAATACCTTCCTTATCCTGGATCTTGGCTTTGA-CGTTGTCAATAGTGTCAGAGCTCTC 123497 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||| || || | || || ||||| ||||| || || || |||||||| Sbjct 123496 GACTTCAAGGGTGATTGTCTTCCCGGTGAGAGTCTTCACGAATATTTGCAT 123446 Score = 104 bits (114), Expect = 2e-17 Identities = 167/235 (71%), Gaps = 10/235 (4%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC- 45169 || || || || ||||| | |||||||| || || || ||||| || || || || || Sbjct 139329 ATACCACCACGAAGCCTGAGAACTAGATGAAGGGTCGACTCCTTCTGAATGTTGTAGTCA 139270 Query 45170 GCTGACGGTTTTAGAATCGTCC---AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTC 45226 ||| | | || ||||| | ||| ||||| ||| | ||||||| ||||||||| Sbjct 139269 GCTAAAG----TACGGCCGTCCTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGCTGGTC 139214 Query 45227 CGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAG 45285 ||| || || || || |||||||| || || |||| || | || | |||||| || Sbjct 139213 CGGTGGGATACCCTCCTTATCTTGGATCTTAGCCTTGA-CGTTGTCGATGGTGTCAGAGC 139155 Query 45286 ACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || || ||||| | || || |||||||| ||||| || || |||||||| Sbjct 139154 TCTCCACCTCAAGAGTGATAGTCTTTCCGGTTAGGGTTTTGACGAAGATTTGCAT 139100 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || || | ||| || | ||| || ||||| ||||| |||||||| |||||| Sbjct 139785 ATACCTCCACGAAGACGCAAGACCAAATGAAGGGTTGACTCCTTCTGGATATTGTAATCG 139726 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| || | || ||||| ||| | ||||| | ||||||||||| Sbjct 139725 GCCAAGGTACGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGT 139666 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || || ||||| ||||| || || ||| | || | || | |||||| || ||| Sbjct 139665 GGGATACCCTCTTTGTCTTGGATCTTGGCTTTCA-CGTTGTCAATGGTGTCAGAGCTCTC 139607 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| |||| || || || || | || || || || || ||||| Sbjct 139606 CACCTCGAGGGTAATGGTCTTACCAGTCAAGGTCTTGACGAAGATCTGCAT 139556 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || || | ||| || | || || ||||| ||||| || ||||| |||||| Sbjct 123447 ATACCTCCACGAAGACGCAAGACCAAGTGAAGGGTTGACTCCTTCTGAATATTGTAATCG 123388 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| || | || ||||| ||| | ||||| | ||||||||||| Sbjct 123387 GCCAAGGTACGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGT 123328 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || || ||||| ||||| || || ||| | || | || | ||||||||| ||| Sbjct 123327 GGGATACCCTCTTTGTCTTGGATCTTGGCTTTCA-CGTTGTCAATGGTGTCGGAGCTCTC 123269 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| |||| || || || || | || || || || || ||||| Sbjct 123268 CACCTCGAGGGTAATGGTCTTACCAGTCAAGGTCTTGACGAAGATCTGCAT 123218 >seq3586 Length=17470 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || |||||||| || ||||| || |||||| | ||| ||| || | ||| Sbjct 5511 TGGAGGGTTGATTCTTTCTGGATGTTGTAATCGGCCAAGGTACGGCCATCTTCTAGCTGT 5452 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| ||| | ||||| | |||||| ||||| ||||||||||| ||||| ||||| ||| Sbjct 5451 TTTCCGGCGAAGATCAACCTTTGCTGATCCGGAGGAATGCCTTCCTTATCCTGAATCTTT 5392 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 || | || | ||| || || |||||| |||||||| | || ||||| || Sbjct 5391 GCCTTAACATTGTCGATGGTATCAGAGCTCTCGACATCGAGAGTGATGGTCTTGCCAGTG 5332 Query 45318 AGAGTTTTTACAAAAATTTGCATC 45341 || ||||| || |||| ||||||| Sbjct 5331 AGTGTTTTCACGAAAACTTGCATC 5308 Score = 102 bits (112), Expect = 7e-17 Identities = 163/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | |||||| || || || ||||||||||| ||||| || || || Sbjct 6222 ATACCACCACGAAGACGCAACACAAGGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCA 6163 Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 | | || | || ||| || | ||||| || ||| | || | | |||||||||| Sbjct 6162 --GCCAGTGTGCGACCATCCTCAAGCTGTTTCCCAGCGAAGATAAGCCTCTGCTGGTCCG 6105 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | || || || ||||||||||| || || |||| || | ||||| || || Sbjct 6104 GTGGGATTCCCTCTTTATCTTGGATCTTAGCCTTGACATTGTCGATTGTGTCTGAGCTCT 6045 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || ||||| |||| ||||| || ||||||||||| ||||| || ||||| Sbjct 6044 CAACCTCGAGGGTAATGGTTTTCCCTGTTAGAGTTTTGACAAAGATCTGCAT 5993 >seq863 Length=117140 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCT 45172 ||| || ||||| | | ||| ||||| ||||| |||||||| ||||| || || ||| Sbjct 77634 TCCACCACGGAGACGGAGCACCAGATGAAGCGTCGATTCCTTCTGGATGTTGTAGTCGGC 77693 Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232 || || || || | ||||| || ||| | |||||||| ||||||||||| || Sbjct 77694 GAGAGTACGGCCGTCTTCGAGCTGTTTCCCGGCGAAAATCAATCGCTGCTGGTCCGGTGG 77753 Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGAC 45292 || || || || ||||| || || ||||| || | |||||| || |||||||| Sbjct 77754 GATTCCCTCCTTGTCTTGGATCTTCGCTTTGACATTGTCGATGGTGTCAGAGGACTCGAC 77813 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || | || || || ||||| ||||| || || || |||||| Sbjct 77814 CTCAAGGGTGATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATC 77862 >seq2666 Length=20083 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| || || || ||||||||||||||||| ||||| || | || | | ||| || Sbjct 9299 CACAAGGTGAAGTGTTGATTCCTTTTGGATGTTATAGTCTGCAAGAGTGTGACCATCTTC 9358 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 | ||| || || ||| | || | || || ||||| | | || |||||||| || || Sbjct 9359 AAGTTGCTTGCCAGCGAAGATAAGTCTCTGTTGGTCTGCTTGGATCCCTTCTTTGTCGTG 9418 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 ||| || |||| || |||||||| || ||| ||||| || || | ||||| Sbjct 9419 AATCTTGGCCTTGACATTGTCAACGGTGTCAGAGCTCTCAACTTCTAGGGTTATGGTTTT 9478 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| ||||| ||||| |||||||| ||||| Sbjct 9479 GCCAGTTAGGGTTTTCACAAAAATCTGCAT 9508 >seq516 Length=37039 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | || ||| || || || ||||||||||||||||| || || || Sbjct 9987 ATCCCACCACGAAGACGCAGCACAAGGTGAAGTGTTGATTCCTTTTGGATGTTGTAGTCT 10046 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| || | || || || || | || | || ||| ||||| || Sbjct 10047 GCAAGAGTACGACCATCCTCAAGCTGCTTACCAGCAAAGATGAGTCTTTGTTGGTCTGGT 10106 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || |||||||| |||||||| ||| || | |||| ||||| || ||| Sbjct 10107 GGGATCCCTTCTTTGTCTTGAATCTTTGCCTTTACATTATCTATTGTGTCTGAGCTCTCA 10166 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | ||| | |||||||| ||||| ||||| |||||||| ||||| Sbjct 10167 ACCTCCAAAGTTATGGTTTTGCCAGTTAGGGTTTTCACAAAAATCTGCAT 10216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451959073187600