Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq1269 125 9e-24 seq504 116 5e-21 >seq1269 Length=73620 Score = 125 bits (138), Expect = 9e-24 Identities = 317/449 (71%), Gaps = 41/449 (9%) Strand=Plus/Plus Query 7530 CAGCAGCAGCAAGGTCAAGAGGGAAGTT-GT--GAGCAT-TACGCTCGTGC-ATGACTTC 7584 || ||||||| ||||| || |||||||| || |||| | |||| || ||| || ||||| Sbjct 6214 CAACAGCAGCTAGGTCTAGTGGGAAGTTCGTTGGAGCGTGTACGTTCATGCCATAACTTC 6273 Query 7585 CATGCC-AAGACCAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGG--ACACGACCTTG 7641 ||| || ||| | ||||||| | | || ||||| || |||| ||||| ||||| Sbjct 6274 CATACCCAAGGTTACCACGGTTAATAATATCAGCCCAAGTATTCAATTAACACGTCCTTG 6333 Query 7642 ACCATCAA------TGATG-GACTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGG 7694 | ||||| |||| | ||||||| |||||||| || |||||||| ||||| | Sbjct 6334 -CTATCAACTACACTGATTTGGGGGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAG 6392 Query 7695 -TGCTAACACCAAGAGCA-GTGAAC-CAGATGCCA-ACAACTGG-CCATGCTGCG-AG-G 7747 | | | ||| | |||| || ||| || || || || || || ||| || || || | Sbjct 6393 CTACATAAACCTAAAGCAAGTAAACACAAATACCCTACTACCGGGCCAAGCCGCCTAGAG 6452 Query 7748 AAGAAGTGCAGCGAACG-GGAGTTGTTGAACGAA---GCGTATTGGAAGAT--CAGACGA 7801 ||||| || | ||||| ||||||||||| || || ||||||||||| || || Sbjct 6453 AAGAAATGTAAAGAACGAGGAGTTGTTGATGAAACTAGCATATTGGAAGATGTCAATCGG 6512 Query 7802 CCAAAG-TATCCGTGAGCAGC--AACGA-TGTTGTAGGT-CTCTTCTTCTTG-ACCGAAC 7855 ||||| || || |||||||| ||| | ||||||| || |||||||||||| |||||| Sbjct 6513 CCAAAAATAACCATGAGCAGCCTAACAAATGTTGTAAGTTCTCTTCTTCTTGGACCGAAT 6572 Query 7856 TTA---TAACCATAGTTCTGG-GACTCAGACTCAGTGGTTTCAC-GAACCAGAGAAGAGG 7910 | ||||| | | | || ||| || |||||||| | || || | ||| | Sbjct 6573 CTGGCCTAACCTTGCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATACAAACTAGAAG 6632 Query 7911 TTAC-AAGCGAACCATGCATCGCACTGAA 7938 |||| || ||||||||||| ||||| || Sbjct 6633 TTACCAAAGGAACCATGCATAGCACTAAA 6661 >seq504 Length=87311 Score = 116 bits (128), Expect = 5e-21 Identities = 194/268 (72%), Gaps = 23/268 (9%) Strand=Plus/Plus Query 6639 CACCATCTTCAAACAAAGTATTCTCTAC-AGTAGCACCGTGAATAGCA-CAGAGCAATGC 6696 ||||||||||||| |||||||| ||||| ||||||||| |||||||| || |||| || Sbjct 51064 CACCATCTTCAAATAAAGTATTTTCTACCAGTAGCACCATGAATAGCCGCATAGCAGAGC 51123 Query 6697 TCCACCTA-AG-ATACCTGCTACA-CCCATCATATGAAACGGGTTGAGCGTCCAGTTGTG 6753 | || || | ||| || || |||||||||||||| ||||| | ||||| || || Sbjct 51124 CGCGCCGCCAGTACACCGGCGACTTCCCATCATATGAAATGGGTTCAATGTCCAATTATG 51183 Query 6754 GAAGCCCT--GTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACACCAAACGACGGCGCA 6811 || ||| | | || || | ||| || ||||| | | || | | |||||| Sbjct 51184 AAACGCCTTGGAAAAAAAAGGATGAATCGAAATATAGGTAAAA----ATA----GGCGCA 51235 Query 6812 AAGAACCAACTGGACTGTCCGA--GAGGATACATGA---GAAAGACAGACACAAAGACAG 6866 |||||| || || || || | | ||||| || | | |||||||| ||||| |||| Sbjct 51236 AAGAAC--ACCAGATTGACCTAACGTGGATAAATTACTCGGAAGACAGAAACAAA-ACAG 51292 Query 6867 CAATGGGACCAGAAAACGCGATTGCATT 6894 |||| |||||||| || ||||||||||| Sbjct 51293 CAATTGGACCAGAGAATGCGATTGCATT 51320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622064065066400