Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq3342 105 8e-18 seq144 96.9 4e-15 seq422 93.3 5e-14 >seq3342 Length=29012 Score = 105 bits (116), Expect = 8e-18 Identities = 219/322 (68%), Gaps = 8/322 (2%) Strand=Plus/Plus Query 12789 TCGAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCG 12848 || || |||||||||||||||| ||| ||||| | || ||||| | ||||||||| | Sbjct 13916 TCAAAACCATCCATCTCAGTCAGGAGCTGATTAAGTGTCTGTTCTCTTTCATCATTACCT 13975 Query 12849 GGCATACCA---CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACG 12905 |||| || | | | |||| |||| || || || ||||| || | ||||| Sbjct 13976 CC---ACCAATTCCAGTTCCTCTTTGCCTACCAACAGCATCTATTTCATCTACAAAAACA 14032 Query 12906 ATACACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACA 12965 || ||||| |||||| ||| || || | |||||| || || |||||| ||| Sbjct 14033 ATGCACGGAGCATTTTCTTTGGCCTTTTTGAAAAGATCTCGGACCCTTGAGGCACCAACA 14092 Query 12966 CCCACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTC 13024 || ||||||||||| ||||| | | | | | || | | |||||| || || ||| Sbjct 14093 CCGACAAACATCTCAACAAACTCAGAACCAG-AGATGGAAAAGAAGGGTACACCGGCTTC 14151 Query 13025 ACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGC 13084 ||| || |||||| || | |||||| ||||| || || || || | || || | Sbjct 14152 ACCAGCAATGGCTTTTGCCAAGAGGGTTTTCCCAGTACCAGGAGGACCAACAAGGAGAAC 14211 Query 13085 ACCACGTGGGATCCTGGCACCA 13106 ||| ||||||| ||||||| Sbjct 14212 ACCTTTGGGGATCCGGGCACCA 14233 >seq144 Length=115930 Score = 96.9 bits (106), Expect = 4e-15 Identities = 181/262 (69%), Gaps = 7/262 (3%) Strand=Plus/Minus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 || ||||| || ||||| | ||| || |||||| | ||| |||||||| || || ||| Sbjct 56076 CCTTCGTCTCGAGAGATCAATTCGTTAGAGAAGGTTAAACCAGGCATGAGTCCTCGTTTC 56017 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 || | |||||| || | || || || ||||||||||| || || || || ||||| Sbjct 56016 TTAAGCCAGAAGATGGAGCAGAAGCTACCGGAGAAGAAGATACCTTCAACGCAAGCGAAA 55957 Query 127658 GCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTGT 127717 || | | || || || |||| | || | || | ||| |||||||||||||| Sbjct 55956 GCTACGATTCGTTCAGCGAAGGTTTGAGA---TCCGTCGATCCAAGTCATCGCCCACTGT 55900 Query 127718 GCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCT-TCT-TTTCTG 127775 || || ||| ||| || || | ||| | ||||| ||||| | | ||| | | || Sbjct 55899 GCTTTCTTCGCGACGCAAGGAATGGTTTCAATCGCGCGGAAGAGATGATCTCTCTCTTTG 55840 Query 127776 ATGGATCTTTGATGTACTTATC 127797 | ||||||||||||| |||| Sbjct 55839 TT--ATCTTTGATGTACGTATC 55820 >seq422 Length=101449 Score = 93.3 bits (102), Expect = 5e-14 Identities = 138/195 (71%), Gaps = 3/195 (2%) Strand=Plus/Plus Query 127532 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 127591 || ||||| ||||| | ||||| ||||| || ||||| || || ||||| | ||| Sbjct 43780 TGAAGACCTTCGTCTCTTGAGATCAGTTCGTTGGAGAAAGTAAGTCCAGGCATTAAACCT 43839 Query 127592 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 127651 || ||||||||||||||||| | |||||| || ||||||||||| || || || || Sbjct 43840 CGTTTCTTCAACCAGAAAATAGAACAAAAGCTACCGGAGAAGAAGATACCTTCAACGCAA 43899 Query 127652 GCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCC 127711 || || || | | || || || ||| | || | || | ||| ||||||||| Sbjct 43900 GCAAAAGCCACGATTCGTTCAGCGAAGCTTTGAGA---TCCGTCGATCCATTTCATCGCC 43956 Query 127712 CACTGTGCCTTTTTC 127726 || ||||| || ||| Sbjct 43957 CATTGTGCTTTCTTC 43971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613447306359600