Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq863 127 2e-24 seq3586 109 6e-19 seq275 100 3e-16 seq308 82.4 9e-11 >seq863 Length=117140 Score = 127 bits (140), Expect = 2e-24 Identities = 162/222 (73%), Gaps = 1/222 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||||||||| | || ||||| ||||| |||||||||| ||||| || | Sbjct 77646 ACGGAGCACCAGATGAAGCGTCGATTCCTTCTGGATGTTGTAGTCGGCGAGAGTACGGCC 77705 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| |||||||| || |||||||| ||||| ||||||||||| | || | | |||||| Sbjct 77706 GTCTTCGAGCTGTTTCCCGGCGAAAATCAATCGCTGCTGGTCCGGTGGGATTCCCTCCTT 77765 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| ||||||| |||| | | | ||||| || || || || | ||||| Sbjct 77766 GTCTTGGATCTTCGCTTTGACATTGTCGATGGTGTCAGAGGACTCGACCTCAAGGGTGAT 77825 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT-TTTGC 46598 ||| || ||||| || ||||| || ||||| ||||| ||||| Sbjct 77826 GGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATCTTTGC 77867 >seq3586 Length=17470 Score = 109 bits (120), Expect = 6e-19 Identities = 164/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| ||||| | ||| | |||| ||| | || |||||||||||| |||||||| | Sbjct 5765 TGCCACCTCTCAGACGAAGAACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAG 5706 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || ||||| | || || |||||||| ||||| || || | | |||||| || | | Sbjct 5705 CGAGTGTGCGACCATCCTCAAGCTGCTTACCGGCAAAGATAAGTCTCTGCTGATCCGGAG 5646 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATT 46541 | | | ||||||||| |||||| ||||| | | | ||||| |||| | Sbjct 5645 GGATACCTTCCTTGTCCTGGATCTTAGCCTTGACATTATCAATAGTGTCAGAGCTC---T 5589 Query 46542 CCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || |||| |||||||||||||| || || || || |||||||| ||||| Sbjct 5588 CGACCTCCAAAGTGATGGTTTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 5537 Score = 96.9 bits (106), Expect = 4e-15 Identities = 139/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| | || ||||| | || || |||||||| || ||||| Sbjct 5956 CTCCTTCTGGATGTTGTAGTCAGCGAGTGTGCGACCATCCTCAAGCTGCTTACCAGCGAA 5897 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | | |||||||| | || | | ||||||||| ||||| ||||| | Sbjct 5896 GATGAGTCTTTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGAATCTTAGCCTTGACATT 5837 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | ||||| |||| || || |||| ||| ||||||||||| || || || || Sbjct 5836 ATCGATAGTGTCTGAGCTC---TCGACCTCCAACGTAATGGTTTTGCCGGTGAGGGTCTT 5780 Query 46579 AACAAAGATTTGCAT 46593 ||||||||| ||||| Sbjct 5779 AACAAAGATCTGCAT 5765 >seq275 Length=143682 Score = 100 bits (110), Expect = 3e-16 Identities = 142/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || |||||||| | || ||| || |||| ||||| ||||| |||||||| Sbjct 139291 CTCCTTCTGAATGTTGTAGTCAGCTAAAGTACGGCCGTCCTCGAGTTGCTTTCCGGCGAA 139232 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| | |||||||| | || | | |||||| || |||||| ||||| ||| Sbjct 139231 GATCAATCTTTGCTGGTCCGGTGGGATACCCTCCTTATCTTGGATCTTAGCCTTGA-CGT 139173 Query 46522 CGCC-ACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577 | | | ||||| |||| ||||| || | ||||| || || || || || |||| Sbjct 139172 TGTCGATGGTGTCAGAGCTC---TCCACCTCAAGAGTGATAGTCTTTCCGGTTAGGGTTT 139116 Query 46578 TAACAAAGATTTGCAT 46593 | || ||||||||||| Sbjct 139115 TGACGAAGATTTGCAT 139100 Score = 91.5 bits (100), Expect = 2e-13 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | |||||| |||| ||| | || |||||| ||||||||||| |||| Sbjct 139782 CCTCCACGAAGACGCAAGACCAAATGAAGGGTTGACTCCTTCTGGATATTGTAATCGGCC 139723 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | || || | || || |||||||| |||||||| ||||| | ||||||||| | || Sbjct 139722 AAGGTACGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGG 139663 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 46542 | | ||| ||||| |||||| ||| ||| | | | ||||| |||| || Sbjct 139662 ATACCCTCTTTGTCTTGGATCTT-GGCTTTCACGTTGTCAATGGTGTCAGAGCTC---TC 139607 Query 46543 CACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || | || ||||| || || |||| || || || ||||| ||||| Sbjct 139606 CACCTCGAGGGTAATGGTCTTACCAGTCAAGGTCTTGACGAAGATCTGCAT 139556 Score = 86.0 bits (94), Expect = 7e-12 Identities = 160/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||||||||||| ||| | || ||||||||| || ||||| |||| Sbjct 123672 CCTCCACGAAGACGCAACACCAAATGAAGGGTTGACTCCTTTTGAATGTTGTAATCGGCC 123613 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | ||||| | || || |||||||| || ||||| || | ||||||||||| | || Sbjct 123612 AAGGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGA 123553 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 46542 | | ||||| ||| |||||| |||| ||| | | | ||||| |||| || Sbjct 123552 ATACCTTCCTTATCCTGGATCTTGGCTTTGA-CGTTGTCAATAGTGTCAGAGCTC---TC 123497 Query 46543 CACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || | ||||| || || || || || || || || || |||||||| Sbjct 123496 GACTTCAAGGGTGATTGTCTTCCCGGTGAGAGTCTTCACGAATATTTGCAT 123446 Score = 84.2 bits (92), Expect = 2e-11 Identities = 140/197 (71%), Gaps = 9/197 (5%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| |||||||| | | ||||| | || || ||||| || || ||||| Sbjct 123866 CTCCTTTTGGATGTTGTAGTCAGCCAATGTGCGACCATCCTCAAGCTGTTTTCCAGCGAA 123807 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | | ||||||||| |||||| ||||| ||| Sbjct 123806 GATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTTGTCCTGGATCTTGGCCTTGA-CGT 123748 Query 46522 CG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTC-AGCGTT 46576 | | | ||||| |||| || || || | |||||||| || || ||| || || Sbjct 123747 TGTCGATGGTGTCAGAGCTC---TCAACCTCAAGGGTGATGGTCTTTCCGGTCAAGAGTC 123691 Query 46577 TTAACAAAGATTTGCAT 46593 || || ||||| ||||| Sbjct 123690 TTCACGAAGATCTGCAT 123674 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| |||||||||||||| | | ||| || |||| || | |||||| |||||||| Sbjct 139062 TCCTTCTGGATATTGTAGTCAGCCAAAGTACGGCCGTCCTCCAACTGCTTTCCGGCGAAG 139003 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | | |||||| || | || | | ||||| ||| |||||| ||| | ||| Sbjct 139002 ATAAGCCTCTGCTGATCCGGAGGAATACCTTCCTTATCCTGGATCTTGGCCTT-AACGTT 138944 Query 46523 G-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | | ||||| ||| |||||| || | |||||||| || || || || || || Sbjct 138943 GTCGATGGTGTCAGAGCT---TTCCACCTCGAGGGTGATGGTCTTTCCGGTGAGAGTCTT 138887 Query 46579 AACAAAGATTTGCAT 46593 ||| ||||| ||||| Sbjct 138886 AACGAAGATCTGCAT 138872 >seq308 Length=205501 Score = 82.4 bits (90), Expect = 9e-11 Identities = 159/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| | ||| | ||||| ||| | || || || ||||| ||||| |||| Sbjct 131165 CCTCCTCTCAGACGAAGCACCAAATGAAGGGTTGATTCTTTCTGGATGTTGTAATCGGCA 131224 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 |||||||| | || || ||||| || || || || || | | ||| ||||| | || Sbjct 131225 AGAGTGCGACCATCCTCAAGCTGTTTACCAGCAAAGATGAGTCTCTGTTGGTCCGGAGGG 131284 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCG-TGTC---GCTCGATTC 46542 | | |||||||| ||||| ||| | | | | || || |||| |||| || Sbjct 131285 ATTCCTTCCTTGTCTTGAATCTTAG-CTTTAACATTGTCAACGGTGTCAGAGCTC---TC 131340 Query 46543 CACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || | || ||||||||||| || || ||||| ||||| |||||||| Sbjct 131341 AACTTCTAGGGTAATGGTTTTGCCAGTGAGGGTTTTCACAAATATTTGCAT 131391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565183218601200