Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq1 87.8 1e-12 seq275 84.2 2e-11 >seq1 Length=111110 Score = 87.8 bits (96), Expect = 1e-12 Identities = 165/241 (68%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| || ||| || |||||||| | || ||||| || || || |||||||| Sbjct 60647 CCTCCTCTCAGACGGAGCACCAAATGAAGCGTCGACTCTTTCTGGATGTTGTAATCGGCG 60588 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | | | || |||| ||| |||||| | || || | |||||||||||||| || Sbjct 60587 AGTGTCCTTCCGTCTTCCAGTTGCTTCCCGGCGAAGATCAGACGCTGCTGATCCGGTGGG 60528 Query 39613 ACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | ||||| ||||| | || || | || |||| | |||||| | ||| | Sbjct 60527 ATTCCTTCCTTGTCTTGGATCTTCGCCTTCACATTGTCG--ATTGTGTCCGATGATTCAA 60470 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATGTCGTGTGTTT 39730 | || | || || || || ||||||| ||||| |||||||||||||| | | ||||| Sbjct 60469 CCTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTTTTTTTGTTT 60410 Query 39731 C 39731 | Sbjct 60409 C 60409 >seq275 Length=143682 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||||| |||||||| | || || || || ||||| ||||||||| Sbjct 139782 CCTCCACGAAGACGCAAGACCAAATGAAGGGTTGACTCCTTCTGGATATTGTAATCGGCC 139723 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || || |||| || | || || ||| | || || || | |||||| |||| || Sbjct 139722 AAGGTACGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGG 139663 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTG-TGTCTGCGCTTTCCAC 39671 | || |||||||| || || ||| | ||| | | || |||| | ||| ||||| Sbjct 139662 ATACCCTCTTTGTCTTGGATCTTGGCTTTCA-CGTTGTCAATGGTGTCAGAGCTCTCCAC 139604 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | ||||| || ||||| || || || || |||||||||||||| Sbjct 139603 CTCGAGGGTAATGGTCTTACCAGTCAAGGTCTTGACGAAGATCTGCAT 139556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347336535841730