Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq144 125 9e-24 seq278 114 2e-20 seq3342 111 2e-19 seq236 111 2e-19 seq4792 107 2e-18 seq422 105 8e-18 seq330 95.1 2e-14 >seq144 Length=115930 Score = 125 bits (138), Expect = 9e-24 Identities = 378/573 (66%), Gaps = 13/573 (2%) Strand=Plus/Plus Query 101746 ACAGATTTACTGTGTTCCCCCTGAAGTATCCACACCTCTGGGAACTCTATAAGAAGGCTC 101805 ||||||| | |||| || | | || ||||| ||||||| | |||||||| || | Sbjct 55512 ACAGATTCTGTATGTTTCCGATTCACTACCCACAGATCTGGGAGATGTATAAGAAAGC-C 55570 Query 101806 AAATGAGTAAT-TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACG--ATTGGA 101862 || | | ||||| || ||||| || ||||| ||| | || ||||| ||||| Sbjct 55571 GAAGCATCGTTCTGGACCGCCGAAGAAGTCGATCTATCACAAGAC--GGACGCGATTGGG 55628 Query 101863 AGACTCTAAATGAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGGT 101922 ||| |||||| || |||| | ||||| ||| || |||| || ||||| || | | Sbjct 55629 AGAATCTAAACGACGGTGAACGTCACTTCATCAAACACGTCCTCGCTTTCTTCGCCGCAT 55688 Query 101923 CCGATGGAATTGTTTTTGAGAATATCAATAACAACTTTGCTGAT-GAGGTGCAATCCTCT 101981 | || || || ||||| |||||| || | || || || || || ||| ||| Sbjct 55689 CAGACGGTATCGTTTTAGAGAATCTCGCTT-CACGATTCATGTCAGATGTTCAAGTCTCG 55747 Query 101982 GAAGCGAGATCTTTCTATGCGTATCA-ATGTCATAATGAAATGGTGCATGGGGAGACATA 102040 || ||| | ||||||| | | || || | | ||| | | ||| |||| || Sbjct 55748 GAGGCGCGTGCTTTCTACGGATTCCAGATCGCG-ATTGAGAATATTCATTCCGAGATGTA 55806 Query 102041 CAGTAAACTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGC 102100 ||| || | || | ||| || || ||| |||| | || ||||| || Sbjct 55807 TAGTCTCCTTCTCGATACGTACATCAAAGATAACAAAGAGAGAGATCATCTCTTCCGCGC 55866 Query 102101 CATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATAC 102160 || |||| |||| || | |||||||| | ||||| |||| ||| | || Sbjct 55867 GATTGAAACCATTCCTTGCGTCGCGAAGAAAGCACAGTGGGCGATGACTTGGATCGACGG 55926 Query 102161 AAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTT 102220 | || | |||| ||||| ||| || | || || || || ||||| ||||||||||| Sbjct 55927 A---TCTCAAACCTTCGCTGAACGAATCGTAGCTTTCGCTTGCGTTGAAGGTATCTTCTT 55983 Query 102221 CTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTG 102280 ||| ||| ||||||| | || | ||||| ||||| ||||| |||||||| ||| | Sbjct 55984 CTCCGGTAGCTTCTGCTCCATCTTCTGGCTTAAGAAACGAGGACTCATGCCTGGTTTAAC 56043 Query 102281 CTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 102313 |||||| ||||| | |||||||| ||||| || Sbjct 56044 CTTCTCTAACGAATTGATCTCTCGAGACGAAGG 56076 >seq278 Length=108333 Score = 114 bits (126), Expect = 2e-20 Identities = 246/361 (68%), Gaps = 10/361 (3%) Strand=Plus/Minus Query 15972 TCAAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT 16031 ||||||||||||||||| || | ||||| |||| || ||||| | ||||||||| || Sbjct 38984 TCAAAACCATCCATCTCAGTTAGGAGCTGATTAAGGGTCTGTTCTCTTTCATCATTACCT 38925 Query 16032 GGCATACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACG 16088 |||| || | | | |||| | || || ||||| || ||||| | ||||| Sbjct 38924 ---CCACCAATCCCGGTTCCTCTTTGCCTACCAACAGCATCTATTTCATCTACAAAGACA 38868 Query 16089 ATGCATGGTTGATTTTCGCGAGC-GACTTCAAAGAGATCCCGTACACGCTTGGCGCCCAC 16147 ||||| || ||| || || ||| ||| ||||| || || | | ||| || || Sbjct 38867 ATGCAAGGAGCATTCTCCTTGGCTTTCTTGAAA-AGATCGCGGACTCTCGAGGCACCAAC 38809 Query 16148 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATT 16206 ||||||||||||||| ||||| | | | | | || | || ||| || ||| || || Sbjct 38808 ACCAACAAACATCTCAACAAACTCAGAACCAG-AGATGGAGAAGAAAGGAACACCAGCTT 38750 Query 16207 CACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGG 16266 |||| || |||||| || | ||| || || || ||||| || ||| ||||| Sbjct 38749 CACCAGCGATGGCTTTTGCCAAAAGGGTTTTCCCTGTACCAGGAGGACCAATAAGGAGAA 38690 Query 16267 CACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCA 16326 ||||| || |||||||| ||| || | ||||||| || | ||| ||||| || | Sbjct 38689 CACCTTTCGGGATCTTGGCACCAACAGCAGTGAATCTCTCGGGCTTCTTCAGAAACTCAA 38630 Query 16327 C 16327 | Sbjct 38629 C 38629 >seq3342 Length=29012 Score = 111 bits (122), Expect = 2e-19 Identities = 300/452 (66%), Gaps = 18/452 (4%) Strand=Plus/Plus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 || ||||| || ||||| | || | ||| ||||| || || | | || ||||| Sbjct 13829 CGGTCAAACCGCCCTGGTCTTAGCAAAGCGGAGTCAAGAATGTCTGCTCTGTTGGTTGCA 13888 Query 15945 GCGATGACAACAATACCTGTTTCGTTA---TCAAAACCATCCATCTCTGTCAAAAGCTGG 16001 || | || | || ||| || |||| ||||||||||||||||| |||| ||||| Sbjct 13889 GCAACTACGATAACACCAGT---GTTACCCTCAAAACCATCCATCTCAGTCAGGAGCTGA 13945 Query 16002 TTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTT 16058 |||| || ||||| | ||||||||| || |||| |||| | | |||| | Sbjct 13946 TTAAGTGTCTGTTCTCTTTCATCATTACCT---CCACCAATTCCAGTTCCTCTTTGCCTA 14002 Query 16059 CCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCA 16118 || || ||||| || ||||| | || || ||||| || |||||| || || Sbjct 14003 CCAACAGCATCTATTTCATCTACAAAAACAATGCACGGAGCATTTTCTTTGGCCTTTTTG 14062 Query 16119 AAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 16178 || ||||| || || | ||| || ||||| ||||||||||| ||||| | | | Sbjct 14063 AAAAGATCTCGGACCCTTGAGGCACCAACACCGACAAACATCTCAACAAACTCAGAACCA 14122 Query 16179 GAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 16237 | | || | | |||||| ||| | |||||| ||||||||| || | || || || Sbjct 14123 G-AGATGGAAAAGAAGGGTACACCGGCTTCACCAGCAATGGCTTTTGCCAAGAGGGTTTT 14181 Query 16238 ACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAA 16297 || ||||| || ||| | ||||| ||||| || ||| ||| ||| || | Sbjct 14182 CCCAGTACCAGGAGGACCAACAAGGAGAACACCTTTGGGGATCCGGGCACCA--ACCGCA 14239 Query 16298 GT--ATCTCTCAGGTTGCTTAAGAAAATCCAC 16327 || | |||||||| | ||| ||||| || || Sbjct 14240 GTAAACCTCTCAGGCTTCTTCAGAAACTCAAC 14271 >seq236 Length=170583 Score = 111 bits (122), Expect = 2e-19 Identities = 272/405 (67%), Gaps = 12/405 (3%) Strand=Plus/Minus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| ||||||||||| ||||| | ||| ||||| || ||||| | |||||||| || Sbjct 103730 AAATCCATCCATCTCAGTCAACAACTGATTAATGGTCTGTTCTCTCTCATCATTTCCT-- 103673 Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | | ||| ||||| | | ||| | ||||| |||||||||||||||||||| || ||| Sbjct 103672 CCTCCCATCCCAGCTCCTCTCTGCCTCCCCACAGCATCAATCTCATCAATGAATACAATG 103613 Query 16092 CATGGTTGATTTTCGC--GAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCAC 16147 || || |||||| ||| ||||| | ||| | || || || | || || || Sbjct 103612 CAAGG--AGCTTTCGCCTTAGCCTTCTCAAACAAATCTC-TA-ACTCTAGATGCACCAAC 103557 Query 16148 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 16207 ||| ||||| | ||| ||||| | || || | || || ||| || || | ||| Sbjct 103556 ACCCACAAAAAGCTCAACAAACTCTGAAGCCGCGCAGGAGAAGAATGGTACTCCTGCTTC 103497 Query 16208 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGC 16267 || || | |||| || | || |||||||||||||| ||| || | || | Sbjct 103496 TCCAGCCACTGCTCTAGCCAAGAGGGTCTTACCCGTACCAGGCGGTCCAACAAGCAAACA 103437 Query 16268 ACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 16327 ||| ||||||||||| || || ||| | ||||| | ||| | ||||||||| Sbjct 103436 CCCTTTAGGAATCTTGGCACCCAAGGCAGTGTACTTATCAGGGTTCTTCAAAAAATCCAC 103377 Query 16328 AATCTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 16372 || || | || ||| ||||| ||| ||| ||||||| Sbjct 103376 AACTTCCTGTAACTCAAGCTTGGCTTGATCAGCCCCAGCAACATC 103332 >seq4792 Length=4203 Score = 107 bits (118), Expect = 2e-18 Identities = 149/201 (74%), Gaps = 12/201 (6%) Strand=Plus/Plus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| ||||||||||| ||||||||||| ||||| |||||||||| |||||||| | Sbjct 1331 AAATCCATCCATCTCAGTCAAAAGCTGATTAATCGTTTGTTCCCTCTCATCATTACC--A 1388 Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | | ||| ||||| | | |||| | ||||| ||||||||||||||||| || || || Sbjct 1389 CCTCCCATTCCAGCTCCTCTTTGCCTCCCCACAGCATCAATCTCATCAATAAACACAATA 1448 Query 16092 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCAC 16147 || || ||||| || || ||||| | ||||| || || || | || || || Sbjct 1449 CAAGG--AGCTTTCGACTTCGCCTTCTCAAACAAATCCC-TA-ACTCTAGAAGCACCAAC 1504 Query 16148 ACCAACAAACATCTCCACAAA 16168 ||||||||| | ||| ||||| Sbjct 1505 ACCAACAAAAAGCTCAACAAA 1525 >seq422 Length=101449 Score = 105 bits (116), Expect = 8e-18 Identities = 140/194 (72%), Gaps = 3/194 (2%) Strand=Plus/Minus Query 102126 AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGA 102185 |||||||| | ||||| ||||| ||| | || | || | ||| ||||| ||| Sbjct 43970 AAGAAAGCACAATGGGCGATGAAATGGATCGACGGA---TCTCAAAGCTTCGCTGAACGA 43914 Query 102186 CTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTAT 102245 || | || ||||| || ||||| |||||||||||||| ||| ||| || |||||| Sbjct 43913 ATCGTGGCTTTTGCTTGCGTTGAAGGTATCTTCTTCTCCGGTAGCTTTTGTTCTATTTTC 43854 Query 102246 TGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGT 102305 ||| | ||||| |||||| | ||||| || || ||||||||||| || ||||| | Sbjct 43853 TGGTTGAAGAAACGAGGTTTAATGCCTGGACTTACTTTCTCCAACGAACTGATCTCAAGA 43794 Query 102306 GACGAGGGACTCCA 102319 ||||| || || || Sbjct 43793 GACGAAGGTCTTCA 43780 >seq330 Length=201778 Score = 95.1 bits (104), Expect = 2e-14 Identities = 112/149 (75%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 113157 ACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTCGCTTC 113216 || || ||||| || ||| || | || |||||||||||| |||||||| |||| Sbjct 20861 ACTGTGTGGGAGATTAAGCAGAGAAAAGTGGTTGACATGGCCGTTGATCGTGGATGCTTT 20920 Query 113217 ATTGATCAAAGTCAAAGTATGAATCTATTCATGGA-AAGTCCAACGATGTCCAAGCTCTC 113275 || |||||||| |||||| ||||| || |||||| || ||||| || | |||||| | Sbjct 20921 ATAGATCAAAGCCAAAGTTTGAATATACACATGGACAAACCCAACTTTG-CAAAGCTCAC 20979 Query 113276 TTCTATGCACATGTACAGTTGGAAGAAGG 113304 |||| ||||| | ||| |||||| |||| Sbjct 20980 TTCTTTGCACTTCTACGCTTGGAAAAAGG 21008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620681800023200