Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq144 102 1e-16 seq3342 96.9 4e-15 seq422 89.7 6e-13 >seq144 Length=115930 Score = 102 bits (112), Expect = 1e-16 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 119514 CCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTC 119573 ||||| || |||||||| | || ||| |||| | |||||||||||||||| |||| Sbjct 56076 CCTTCGTCTCGAGAGATCAATTCGTTAGAGAAGGTTAAACCAGGCATGAGTCCTCGTTTC 56017 Query 119574 TTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAA 119633 || ||||| ||||||| || || || || || |||||||| || || || || |||||| Sbjct 56016 TTAAGCCAGAAGATGGAGCAGAAGCTACCGGAGAAGAAGATACCTTCAACGCAAGCGAAA 55957 Query 119634 GCGAATAGACGCTCAGCAAAAGGTCGAGACTTGTCGAACCA 119674 || | | || ||||| || | | |||| ||||| ||| Sbjct 55956 GCTACGATTCGTTCAGCGAAGGTTTGAGATCCGTCGATCCA 55916 >seq3342 Length=29012 Score = 96.9 bits (106), Expect = 4e-15 Identities = 294/448 (66%), Gaps = 10/448 (2%) Strand=Plus/Plus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || || || || ||||| | || | ||| |||||||| || | | ||| || || Sbjct 13829 CGGTCAAACCGCCCTGGTCTTAGCAAAGCGGAGTCAAGAATGTCTGCTCTGTTGGTTGCA 13888 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 |||| || | || ||||| | | || ||||| ||||| || || || ||||| || Sbjct 13889 GCAACTACGATAACACCAGTGTTACCCTCAAAACCATCCATCTCAGTCAGGAGCTGATTA 13948 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACG-CTT--CTTACCG 11679 | |||||||| | ||||| || | | |||| | | | | ||| | |||| Sbjct 13949 AGTGTCTGTTCTCTTTCATCATT--ACCTCC-ACCAATTCCAGTTCCTCTTTGCCTACCA 14005 Query 11680 ACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAA 11739 ||||| || || ||||| | || || || ||||| || | |||| || |||| Sbjct 14006 ACAGCATCTATTTCATCTACAAAAACAATGCACGGAGCATTTTCTTTGGCCTTTTTGAAA 14065 Query 11740 AGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGAA 11799 || || || || | || |||||||| || ||||||||||| || | | |||| Sbjct 14066 AGATCTCGGACCCTTGAGGCACCAACACCGACAAACATCTCAACAAACTCAGAACCAGAG 14125 Query 11800 CACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCC 11859 || |||||| ||| | |||||||| |||||| || | ||| || || || Sbjct 14126 ATGGAAAAGAAGGGTACACCGGCTTCACCAGCAATGGCTTTTGCCAAGAGGGTTTTCCCA 14185 Query 11860 GTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAAGTAG 11919 |||||||| | |||| | || || | || ||||||| ||||||| || |||| Sbjct 14186 GTACCAGGAGGACCAACAAGGAGAACACCTTTGGGGATCCGGGCACCAA--CCGCAGTAA 14243 Query 11920 --CGCTCAGGCTTCTTGAGGAAGTCCAC 11945 | |||||||||||| || || || || Sbjct 14244 ACCTCTCAGGCTTCTTCAGAAACTCAAC 14271 >seq422 Length=101449 Score = 89.7 bits (98), Expect = 6e-13 Identities = 330/510 (65%), Gaps = 13/510 (3%) Strand=Plus/Plus Query 119507 ATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCC 119566 |||||| ||||| || | ||||| || || || ||| |||||||||||| | || Sbjct 43779 ATGAAGACCTTCGTCTCTTGAGATCAGTTCGTTGGAGAAAGTAAGTCCAGGCATTAAACC 43838 Query 119567 TCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACA 119626 || |||||| | ||| || || | |||||| || || || |||||||| || || || || Sbjct 43839 TCGTTTCTTCAACCAGAAAATAGAACAAAAGCTACCGGAGAAGAAGATACCTTCAACGCA 43898 Query 119627 GGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTTGTCGAACCACTTGAGAGCCCA 119686 || ||||| | | || ||||| || | |||| ||||| ||| || | ||||| Sbjct 43899 AGCAAAAGCCACGATTCGTTCAGCGAAGCTTTGAGATCCGTCGATCCATTTCATCGCCCA 43958 Query 119687 GTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGCTTCTTTTC 119746 | || || | || || || | |||| || || ||| || || | | || Sbjct 43959 TTGTGCTTTCTTCGTTACACAAGGAATGGTTTCAATTGCGCGGAAGAGATGATCTCTCTC 44018 Query 119747 AGCACCATCCTTAATATATTTATC---AATGAGTTTAGAGTAGGTCTCACCATGAACCAT 119803 ||| || ||||| |||| || ||| || || ||||| |||| | Sbjct 44019 TTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTA---TACATCTCAGAGTGAATATT 44075 Query 119804 TTCATTGTGTGA-CTGATAGGCATAAAATGAGCGAGCTTCGGAAATTTGCACTTC-GTCA 119861 ||| | | || ||| | | ||||| | ||||| ||||| || || || || | || Sbjct 44076 CTCAAT-CGCGATTTGAAATCCGTAAAAGGCACGAGCCTCGGAGATCTGAACATCGGACA 44134 Query 119862 GCAAAATTGTTGTTGATATTTTCAAAAACAATTCCATCGGATCCAGCGAAGAATGCTAAG 119921 || |||| | | ||| || ||||| || || || ||| | |||||||| || | Sbjct 44135 TGAATCGGGTTGAT-AGATTCTCTAAAACGATGCCGTCTGATGCGGCGAAGAAGGCGAGT 44193 Query 119922 ATGTACTTTATGAATTTCTGTTCATTATCGTTGAGTG---TTTTCCAGTCGTCCATATCT 119978 | || || ||||| | |||| | ||||| | | ||| ||||||| ||||| Sbjct 44194 ACGTGTTTGATGAAGTGTCGTTCGTCGTCGTTTAAGGAATTTTCCCAGTCGCGATTATCT 44253 Query 119979 TTAGACAAGTCCACCTCTTCAGCTGTCCAG 120008 | ||| | || || ||||| || |||||| Sbjct 44254 TGAGATAGATCGACTTCTTCGGCGGTCCAG 44283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588918501218000