Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq3342 122 1e-22 seq278 116 4e-21 seq236 116 4e-21 seq4792 114 2e-20 seq422 102 1e-16 seq144 82.4 9e-11 >seq3342 Length=29012 Score = 122 bits (134), Expect = 1e-22 Identities = 300/449 (67%), Gaps = 12/449 (3%) Strand=Plus/Plus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 || ||||| || ||||| | || | ||| ||||| || || | | || || || Sbjct 13829 CGGTCAAACCGCCCTGGTCTTAGCAAAGCGGAGTCAAGAATGTCTGCTCTGTTGGTTGCA 13888 Query 9252 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 || | || | || ||| || | | ||||||||||||||||| |||| || || ||| Sbjct 13889 GCAACTACGATAACACCAGTGTTACCCTCAAAACCATCCATCTCAGTCAGGAGCTGATTA 13948 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCC 9368 | || ||||| | ||||||||| || |||| |||| | | |||| | || Sbjct 13949 AGTGTCTGTTCTCTTTCATCATTACCTCC---ACCAATTCCAGTTCCTCTTTGCCTACCA 14005 Query 9369 ACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 9428 || ||||| || ||||| | || ||||| || || |||||| ||| ||| || Sbjct 14006 ACAGCATCTATTTCATCTACAAAAACAATGCACGGAGCATTTTCTTTGGCCTTTTTGAAA 14065 Query 9429 AGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9488 ||||| || |||||| ||| || ||||| ||||||||||| ||||| | | | | | Sbjct 14066 AGATCTCGGACCCTTGAGGCACCAACACCGACAAACATCTCAACAAACTCAGAACCAG-A 14124 Query 9489 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9547 || | | |||||| ||| | |||||| ||||||||| || | || || || || Sbjct 14125 GATGGAAAAGAAGGGTACACCGGCTTCACCAGCAATGGCTTTTGCCAAGAGGGTTTTCCC 14184 Query 9548 CGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCACTTCCAAAGT- 9606 ||||| || ||| | ||||| |||| || ||| ||| ||| || ||| Sbjct 14185 AGTACCAGGAGGACCAACAAGGAGAACACCTTTGGGGATCCGGGCACCA--ACCGCAGTA 14242 Query 9607 -ATCTCTCAGGTTGCTTGAGAAAATCCAC 9634 | |||||||| | ||| ||||| || || Sbjct 14243 AACCTCTCAGGCTTCTTCAGAAACTCAAC 14271 >seq278 Length=108333 Score = 116 bits (128), Expect = 4e-21 Identities = 244/360 (68%), Gaps = 8/360 (2%) Strand=Plus/Minus Query 9279 TCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT 9338 ||||||||||||||||| || | || || |||| || ||||| | ||||||||| || Sbjct 38984 TCAAAACCATCCATCTCAGTTAGGAGCTGATTAAGGGTCTGTTCTCTTTCATCATTACCT 38925 Query 9339 GGCATACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACA 9395 |||| || | | | |||| | || || ||||| || ||||| | |||||| Sbjct 38924 CC---ACCAATCCCGGTTCCTCTTTGCCTACCAACAGCATCTATTTCATCTACAAAGACA 38868 Query 9396 ATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACA 9455 || || || ||| || ||| | | || |||||||| || || ||| || ||| Sbjct 38867 ATGCAAGGAGCATTCTCCTTGGCTTTCTTGAAAAGATCGCGGACTCTCGAGGCACCAACA 38808 Query 9456 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTC 9514 |||||||||||||| ||||| | | | | | || | || ||| || ||| || ||| Sbjct 38807 CCAACAAACATCTCAACAAACTCAGAACCAG-AGATGGAGAAGAAAGGAACACCAGCTTC 38749 Query 9515 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGC 9574 ||| || |||||| || | ||| || || || ||||| || ||| ||||| | Sbjct 38748 ACCAGCGATGGCTTTTGCCAAAAGGGTTTTCCCTGTACCAGGAGGACCAATAAGGAGAAC 38689 Query 9575 ACCCCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCAC 9634 ||| || |||||||| ||| || | ||||||| || | ||| ||||| || || Sbjct 38688 ACCTTTCGGGATCTTGGCACCAACAGCAGTGAATCTCTCGGGCTTCTTCAGAAACTCAAC 38629 >seq236 Length=170583 Score = 116 bits (128), Expect = 4e-21 Identities = 272/404 (67%), Gaps = 10/404 (2%) Strand=Plus/Minus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| ||||||||||| ||||| | || ||||| || ||||| | |||||||| || Sbjct 103730 AAATCCATCCATCTCAGTCAACAACTGATTAATGGTCTGTTCTCTCTCATCATTTCCT-- 103673 Query 9341 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398 | | ||| ||||| | | ||| | ||||| |||||||||||||||||||| ||||| Sbjct 103672 CCTCCCATCCCAGCTCCTCTCTGCCTCCCCACAGCATCAATCTCATCAATGAATACAATG 103613 Query 9399 CATGGTTGATTTTCGC--GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACAC 9456 || || |||||| || | ||||| | ||| | ||| || || || |||| Sbjct 103612 CAAGG--AGCTTTCGCCTTAGCCTTCTCAAACAAATCTCTAACTCTAGATGCACCAACAC 103555 Query 9457 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 9516 | ||||| | ||| ||||| | || || | || || ||| || || | ||| | Sbjct 103554 CCACAAAAAGCTCAACAAACTCTGAAGCCGCGCAGGAGAAGAATGGTACTCCTGCTTCTC 103495 Query 9517 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCAC 9576 | || | |||| || | || |||||||||||||| ||| || | || | ||| Sbjct 103494 CAGCCACTGCTCTAGCCAAGAGGGTCTTACCCGTACCAGGCGGTCCAACAAGCA-AACAC 103436 Query 9577 CCCGT-GGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACA 9635 || | ||||||||||| || || ||| | ||||| | ||| | |||||||||| Sbjct 103435 CCTTTAGGAATCTTGGCACCCAAGGCAGTGTACTTATCAGGGTTCTTCAAAAAATCCACA 103376 Query 9636 ATCTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 9679 | || | || ||| ||||| ||| ||| ||||||| Sbjct 103375 ACTTCCTGTAACTCAAGCTTGGCTTGATCAGCCCCAGCAACATC 103332 >seq4792 Length=4203 Score = 114 bits (126), Expect = 2e-20 Identities = 181/255 (71%), Gaps = 6/255 (2%) Strand=Plus/Plus Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9283 |||||| | |||| | ||| ||||| || | |||| | ||| | | | | ||| Sbjct 1274 ATCAAGAACATCAGGTCTATTAGTCGCAGCCAACACAATGACACCAGAATTACCAGAAAA 1333 Query 9284 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9343 ||||||||||| |||||||| || ||||| |||||||||| |||||||| | | | Sbjct 1334 TCCATCCATCTCAGTCAAAAGCTGATTAATCGTTTGTTCCCTCTCATCATTACC--ACCT 1391 Query 9344 ACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACAT 9401 ||| ||||| | | |||| | ||||| ||||||||||||||||| || |||||||| Sbjct 1392 CCCATTCCAGCTCCTCTTTGCCTCCCCACAGCATCAATCTCATCAATAAACACAATACAA 1451 Query 9402 GGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAAC 9460 || | ||| | || | ||||| | ||| | ||| || || || |||||||| Sbjct 1452 GG-AGCTTTCGACTTCGCCTTCTCAAACAAATCCCTAACTCTAGAAGCACCAACACCAAC 1510 Query 9461 AAACATCTCCACAAA 9475 ||| | ||| ||||| Sbjct 1511 AAAAAGCTCAACAAA 1525 >seq422 Length=101449 Score = 102 bits (112), Expect = 1e-16 Identities = 140/195 (72%), Gaps = 3/195 (2%) Strand=Plus/Plus Query 117286 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCC 117345 || ||||| || |||| || || ||||| || ||||| || || ||||| | ||| Sbjct 43780 TGAAGACCTTCGTCTCTTGAGATCAGTTCGTTGGAGAAAGTAAGTCCAGGCATTAAACCT 43839 Query 117346 CGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACAC 117405 || ||||||||||| |||||| || || ||||||||||||||||| || || || Sbjct 43840 CGTTTCTTCAACCAGAAAATAGAACAAAAGCTACCGGAGAAGAAGATACCTTCAACGCAA 43899 Query 117406 GCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAACCATTTCATTGCC 117465 ||||| || | | || || |||||| |||| | ||| | ||||||||| ||| Sbjct 43900 GCAAAAGCCACGATTCGTTCAGCGAAGCTTTGAGA---TCCGTCGATCCATTTCATCGCC 43956 Query 117466 CATTTCGCCTTCTTC 117480 |||| || |||||| Sbjct 43957 CATTGTGCTTTCTTC 43971 >seq144 Length=115930 Score = 82.4 bits (90), Expect = 9e-11 Identities = 132/189 (70%), Gaps = 3/189 (2%) Strand=Plus/Minus Query 117292 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTC 117351 || || ||||| || || | ||| || |||||| || || |||||||| || || ||| Sbjct 56076 CCTTCGTCTCGAGAGATCAATTCGTTAGAGAAGGTTAAACCAGGCATGAGTCCTCGTTTC 56017 Query 117352 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 || | ||| | || | |||||| ||||||||||||||||| || || || || || Sbjct 56016 TTAAGCCAGAAGATGGAGCAGAAGCTACCGGAGAAGAAGATACCTTCAACGCAAGCGAAA 55957 Query 117412 GCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAACCATTTCATTGCCCATTTC 117471 || | | || || ||||||| |||| | ||| | ||| |||| ||||| | Sbjct 55956 GCTACGATTCGTTCAGCGAAGGTTTGAGA---TCCGTCGATCCAAGTCATCGCCCACTGT 55900 Query 117472 GCCTTCTTC 117480 || |||||| Sbjct 55899 GCTTTCTTC 55891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589923203124400