Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq317 123 3e-23 seq1269 114 2e-20 >seq317 Length=114279 Score = 123 bits (136), Expect = 3e-23 Identities = 131/173 (76%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 171909 CTGGACGCTGCAGATGAAGCGGGGGTTGATGCTCCATATTCCTGCCGTGCCGGTGCCTGT 171968 || ||||| || || ||||| || |||| || || || |||||||| ||| | || Sbjct 8604 CTCGACGCAGCTGAGGAAGCTGGAATTGACTTGCCTTACTCATGCCGTGCTGGTTCTTGC 8663 Query 171969 TCCAGCTGTGCTGGTAAACTTGAGAGTGGTACGGTAGATCAGTCAGAGCAATCTTTCCTT 172028 || | ||||||||||||| ||||| |||||| || |||||||| || || ||||||| Sbjct 8664 TCAACCTGTGCTGGTAAAGTTGAGTCTGGTACTGTTGATCAGTCTGACCAGAGTTTCCTT 8723 Query 172029 GATGATGATCAAATGGACGCAGGATTCGTTCTGACCTGTGTTGCTTATCCTAC 172081 |||||||| || || | | ||||| ||||| || |||| ||||||||||| Sbjct 8724 GATGATGAACAGATTGGTGAAGGATATGTTCTCACTTGTGCGGCTTATCCTAC 8776 >seq1269 Length=73620 Score = 114 bits (126), Expect = 2e-20 Identities = 254/353 (72%), Gaps = 36/353 (10%) Strand=Plus/Minus Query 180420 CAAGAAGAAGAGACCT-ACAACATC-GTT--GCTGCACATGGATACTTC-GGTCGTCTGA 180474 ||||||||||||| || ||||||| ||| ||||| ||||| || || || || ||| Sbjct 6564 CAAGAAGAAGAGAACTTACAACATTTGTTAGGCTGCTCATGGTTATTTTTGGCCGATTGA 6505 Query 180475 --TCTTCCAGTATGCATCGTT----CAACAACTCC-CGTTCACTTCACTTCTTC-CT-GG 180525 ||||||| ||||| | ||| |||||||||| ||||| | || |||||| || || Sbjct 6504 CATCTTCCAATATGC-TAGTTTCATCAACAACTCCTCGTTCTTTACATTTCTTCTCTAGG 6446 Query 180526 CAGCATGGCCTG-TCGTTGGC-ATCTG-GTTCACT-GCACTGGGCGTAAGCACC-ATGGC 180580 | || ||||| | | || || || || ||| ||| || | || || | | | ||||| Sbjct 6445 CGGCTTGGCCCGGTAGTAGGGTATTTGTGTTTACTTGCTTTAGGTTTATGTAGCTATGGC 6386 Query 180581 ATTCAACCTCAACGGTTTCAACTTCAACCAGTCCA-TCA------TTGATGGTCAAGGTC 180633 |||||||| || |||||||| ||||||| | | ||| ||||| | ||||| | Sbjct 6385 TTTCAACCTAAATGGTTTCAATTTCAACCCCCCAAATCAGTGTAGTTGATAG-CAAGGAC 6327 Query 180634 GTGTGC--TCAACACTTGGGCAGACGTACTCAACCGCGCTGGTCT-GGGTATGGAAGTTA 180690 |||| | || |||||||| || | | ||||| | | || |||||||||||||| Sbjct 6326 GTGTTAATTGAATACTTGGGCTGATATTATTAACCGTGGTAACCTTGGGTATGGAAGTTA 6267 Query 180691 TG-CACGAGCGTA-ATGCTC--AC-AACTTCCCACTTGACCTGGCAGCTGCTG 180738 || || || |||| | |||| || ||||||||||| ||||| || |||| || Sbjct 6266 TGGCATGAACGTACACGCTCCAACGAACTTCCCACTAGACCTAGCTGCTGTTG 6214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610337210012400