Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23]
7,810 sequences; 167,352,128 total letters
Query= NC_015280.1
Length=181044
Score E
Sequences producing significant alignments: (Bits) Value
seq886 127 2e-24
seq397 125 8e-24
seq1269 91.5 2e-13
>seq886
Length=72608
Score = 127 bits (140), Expect = 2e-24
Identities = 144/193 (75%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 153236 ACCCCCAGTCATACAGCGAAACGTTCTTGAGAATCCTAGTTGGTACACATCTTACACTCC 153295
||| ||||| || ||| || | | |||||||| |||||| || ||||| ||
Sbjct 15470 ACCTCCAGTGATTTTGCGTAATATAATGGAGAATCCAGCTTGGTATACTCAATACACACC 15411
Query 153296 CTATCAAGCTGAGATATCTCAGGGAAGATTGGAAGCTTTATTCAATTACCAAACGCTCAT 153355
|||||||||||||| || || |||||| | ||| | || | |||||||||||| | ||
Sbjct 15410 TTATCAAGCTGAGATCTCACAAGGAAGACTCGAATCGTTGCTTAATTACCAAACGGTGAT 15351
Query 153356 CACAGAACTTACAGGATTACCAATAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGC 153415
||| || || || || ||||||| ||||||| || | | ||||||| ||||||||
Sbjct 15350 CACTGATCTCACTGGTCTACCAATGTCAAACGCTTCGTTGCTTGATGAAGGCACTGCAGC 15291
Query 153416 AGCAGAAGCAATG 153428
|||||||||||||
Sbjct 15290 AGCAGAAGCAATG 15278
Score = 113 bits (124), Expect = 5e-20
Identities = 148/203 (73%), Gaps = 4/203 (2%)
Strand=Plus/Minus
Query 153772 GGTTTGGTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACAGACA 153831
|||||||| |||| ||||| ||||| |||||||||||||| || || || || || |
Sbjct 14937 GGTTTGGTGTTCCCATGGGTTATGGTGGTCCTCATGCTGCTTTTTTGGCTACTTCACAAG 14878
Query 153832 AGTATAAGAGAAAGATACCTGGCAGAATTGTAG--GTCAGTCAGTAGATAGTGAAGGTAA 153889
|||||||||||| ||| ||||| || ||| | | || ||| || ||| | || ||
Sbjct 14877 AGTATAAGAGAATGATGCCTGGGAGGATTATTGGTGTTAGT--GTTGATTCTTCTGGGAA 14820
Query 153890 TAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCAAC 153949
|||| | | | || | ||||||||||| || ||||| | || |||||||| ||
Sbjct 14819 GCAAGCTTTGCGTATGGCTATGCAGACTAGAGAACAACATATTCGCAGGGACAAAGCTAC 14760
Query 153950 CAGTAACATCTGCACAGCTCAGG 153972
|| ||||| || || |||||||
Sbjct 14759 TAGCAACATTTGTACCGCTCAGG 14737
>seq397
Length=240941
Score = 125 bits (138), Expect = 8e-24
Identities = 152/205 (74%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 153768 CAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 153827
|||||||||||| |||| ||||| || || |||||||||||||| ||||| || || ||
Sbjct 233478 CAAAGGTTTGGTGTTCCAATGGGTTACGGTGGTCCTCATGCTGCGTTCTTGGCTACTTCA 233537
Query 153828 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGG--TCAGTCAGTAGATAGTGAAG 153885
| |||||||||||| ||| ||||| || ||| | || | ||| || ||| | ||
Sbjct 233538 CAAGAGTATAAGAGAATGATGCCTGGGAGGATTATTGGTATTAGT--GTTGATTCTTCAG 233595
Query 153886 GTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAG 153945
| || ||| | | || | ||||||||||| || ||||| ||||| |||||||
Sbjct 233596 GAAAGCCAGCTCTGCGTATGGCTATGCAGACTAGAGAACAACATATAAGGAGGGACAAAG 233655
Query 153946 CAACCAGTAACATCTGCACAGCTCA 153970
| || || |||||||| || |||||
Sbjct 233656 CCACTAGCAACATCTGTACTGCTCA 233680
Score = 95.1 bits (104), Expect = 1e-14
Identities = 120/165 (73%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 153264 GAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGA 153323
||||||||| ||||||||| |||||||| |||||||||||||| ||||| || |
Sbjct 232977 GAGAATCCTGCTTGGTACACTCAATACACTCCTTATCAAGCTGAGATCTCTCAAGGTCGT 233036
Query 153324 TTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGATTACCAATAGCA 153383
| ||| | | |||||| ||| ||| | ||||| || || || || | || || |
Sbjct 233037 CTTGAATCGCTGCTCAATTTCCAGACGATGATCACTGACCTCACTGGGCTTCCTATGTCT 233096
Query 153384 AACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 153428
||||| || || ||||||||| ||||| || || || || |||
Sbjct 233097 AACGCCTCGCTTCTAGATGAAGGCACTGCTGCTGCGGAGGCTATG 233141
Score = 84.2 bits (92), Expect = 3e-11
Identities = 84/109 (77%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 155018 TGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGGAGGTGG 155077
||| || ||||| || ||||| || | || || || ||||||||||| |||||||||||
Sbjct 235427 TGGAGCGGATGTGTGCCATCTCAATCTCCACAAGACCTTCTGTATTCCTCATGGAGGTGG 235486
Query 155078 AGGTCCTGGCGTAGGTCCTATAGGTGTAGCAAAACATCTCACACCATTT 155126
|||||||| | ||||| || ||||| |||||| | ||||||||
Sbjct 235487 TGGTCCTGGTATGGGTCCCATTGGTGTGAAGAAACATTTGGCACCATTT 235535
>seq1269
Length=73620
Score = 91.5 bits (100), Expect = 2e-13
Identities = 248/354 (70%), Gaps = 38/354 (11%)
Strand=Plus/Minus
Query 170074 CAAGAAGAAGA-AACATACAACATAG--TAG-CAGCACACGGTTACTTTGGTCGTCTT-- 170127
||||||||||| ||| |||||||| ||| | || || ||||| ||| | | ||
Sbjct 6564 CAAGAAGAAGAGAACTTACAACATTTGTTAGGCTGCTCATGGTTATTTTTGGCCGATTGA 6505
Query 170128 -ATCTTCCAGTATGCT----TCATTCAACAACTCAA-GAAGTCTACACTTCTTC-CTAGC 170180
|||||||| |||||| |||| ||||||||| | | |||| |||||| ||||
Sbjct 6504 CATCTTCCAATATGCTAGTTTCAT-CAACAACTCCTCGTTCTTTACATTTCTTCTCTAGG 6446
Query 170181 AGTTTT--CCCTGTTGTATG-TGTATG-GTTAACCT-CTATGGGTATCTGCA-CAATGGC 170234
| || ||| || ||| | | | || ||| || | || | ||| | || | | |||||
Sbjct 6445 CGGCTTGGCCCGGTAGTAGGGTATTTGTGTTTACTTGCTTTAGGTTTATGTAGCTATGGC 6386
Query 170235 ATTCAACTTGAATGGTTTCAACTTTAACC-----AATCA--GTTGTTGAT-GCTA--ACG 170284
|||||| | ||||||||||| || |||| ||||| || |||||| || | |||
Sbjct 6385 TTTCAACCTAAATGGTTTCAATTTCAACCCCCCAAATCAGTGTAGTTGATAGCAAGGACG 6326
Query 170285 GAAAAATCGTCCCAACATGGGGTGATGTTCTAAACAG-AGCAAACTTGGGTATGGAAGTT 170343
||| | || |||| |||| || | ||| | | || ||||||||||||||||
Sbjct 6325 TGTTAAT--TGAATACTTGGGCTGATATTATTAACCGTGGTAACCTTGGGTATGGAAGTT 6268
Query 170344 AT-GCATGAAAG-AAATGCAC--AC-AACTTCCCACTAGACCTAGCATCTGCTG 170392
|| ||||||| | | | || | || |||||||||||||||||||| ||| ||
Sbjct 6267 ATGGCATGAACGTACACGCTCCAACGAACTTCCCACTAGACCTAGCTGCTGTTG 6214
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 579156254350400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |