Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq886 127 2e-24 seq397 125 8e-24 seq1269 91.5 2e-13 >seq886 Length=72608 Score = 127 bits (140), Expect = 2e-24 Identities = 144/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 153236 ACCCCCAGTCATACAGCGAAACGTTCTTGAGAATCCTAGTTGGTACACATCTTACACTCC 153295 ||| ||||| || ||| || | | |||||||| |||||| || ||||| || Sbjct 15470 ACCTCCAGTGATTTTGCGTAATATAATGGAGAATCCAGCTTGGTATACTCAATACACACC 15411 Query 153296 CTATCAAGCTGAGATATCTCAGGGAAGATTGGAAGCTTTATTCAATTACCAAACGCTCAT 153355 |||||||||||||| || || |||||| | ||| | || | |||||||||||| | || Sbjct 15410 TTATCAAGCTGAGATCTCACAAGGAAGACTCGAATCGTTGCTTAATTACCAAACGGTGAT 15351 Query 153356 CACAGAACTTACAGGATTACCAATAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGC 153415 ||| || || || || ||||||| ||||||| || | | ||||||| |||||||| Sbjct 15350 CACTGATCTCACTGGTCTACCAATGTCAAACGCTTCGTTGCTTGATGAAGGCACTGCAGC 15291 Query 153416 AGCAGAAGCAATG 153428 ||||||||||||| Sbjct 15290 AGCAGAAGCAATG 15278 Score = 113 bits (124), Expect = 5e-20 Identities = 148/203 (73%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 153772 GGTTTGGTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACAGACA 153831 |||||||| |||| ||||| ||||| |||||||||||||| || || || || || | Sbjct 14937 GGTTTGGTGTTCCCATGGGTTATGGTGGTCCTCATGCTGCTTTTTTGGCTACTTCACAAG 14878 Query 153832 AGTATAAGAGAAAGATACCTGGCAGAATTGTAG--GTCAGTCAGTAGATAGTGAAGGTAA 153889 |||||||||||| ||| ||||| || ||| | | || ||| || ||| | || || Sbjct 14877 AGTATAAGAGAATGATGCCTGGGAGGATTATTGGTGTTAGT--GTTGATTCTTCTGGGAA 14820 Query 153890 TAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCAAC 153949 |||| | | | || | ||||||||||| || ||||| | || |||||||| || Sbjct 14819 GCAAGCTTTGCGTATGGCTATGCAGACTAGAGAACAACATATTCGCAGGGACAAAGCTAC 14760 Query 153950 CAGTAACATCTGCACAGCTCAGG 153972 || ||||| || || ||||||| Sbjct 14759 TAGCAACATTTGTACCGCTCAGG 14737 >seq397 Length=240941 Score = 125 bits (138), Expect = 8e-24 Identities = 152/205 (74%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 153768 CAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 153827 |||||||||||| |||| ||||| || || |||||||||||||| ||||| || || || Sbjct 233478 CAAAGGTTTGGTGTTCCAATGGGTTACGGTGGTCCTCATGCTGCGTTCTTGGCTACTTCA 233537 Query 153828 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGG--TCAGTCAGTAGATAGTGAAG 153885 | |||||||||||| ||| ||||| || ||| | || | ||| || ||| | || Sbjct 233538 CAAGAGTATAAGAGAATGATGCCTGGGAGGATTATTGGTATTAGT--GTTGATTCTTCAG 233595 Query 153886 GTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAG 153945 | || ||| | | || | ||||||||||| || ||||| ||||| ||||||| Sbjct 233596 GAAAGCCAGCTCTGCGTATGGCTATGCAGACTAGAGAACAACATATAAGGAGGGACAAAG 233655 Query 153946 CAACCAGTAACATCTGCACAGCTCA 153970 | || || |||||||| || ||||| Sbjct 233656 CCACTAGCAACATCTGTACTGCTCA 233680 Score = 95.1 bits (104), Expect = 1e-14 Identities = 120/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 153264 GAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGA 153323 ||||||||| ||||||||| |||||||| |||||||||||||| ||||| || | Sbjct 232977 GAGAATCCTGCTTGGTACACTCAATACACTCCTTATCAAGCTGAGATCTCTCAAGGTCGT 233036 Query 153324 TTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGATTACCAATAGCA 153383 | ||| | | |||||| ||| ||| | ||||| || || || || | || || | Sbjct 233037 CTTGAATCGCTGCTCAATTTCCAGACGATGATCACTGACCTCACTGGGCTTCCTATGTCT 233096 Query 153384 AACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 153428 ||||| || || ||||||||| ||||| || || || || ||| Sbjct 233097 AACGCCTCGCTTCTAGATGAAGGCACTGCTGCTGCGGAGGCTATG 233141 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 155018 TGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGGAGGTGG 155077 ||| || ||||| || ||||| || | || || || ||||||||||| ||||||||||| Sbjct 235427 TGGAGCGGATGTGTGCCATCTCAATCTCCACAAGACCTTCTGTATTCCTCATGGAGGTGG 235486 Query 155078 AGGTCCTGGCGTAGGTCCTATAGGTGTAGCAAAACATCTCACACCATTT 155126 |||||||| | ||||| || ||||| |||||| | |||||||| Sbjct 235487 TGGTCCTGGTATGGGTCCCATTGGTGTGAAGAAACATTTGGCACCATTT 235535 >seq1269 Length=73620 Score = 91.5 bits (100), Expect = 2e-13 Identities = 248/354 (70%), Gaps = 38/354 (11%) Strand=Plus/Minus Query 170074 CAAGAAGAAGA-AACATACAACATAG--TAG-CAGCACACGGTTACTTTGGTCGTCTT-- 170127 ||||||||||| ||| |||||||| ||| | || || ||||| ||| | | || Sbjct 6564 CAAGAAGAAGAGAACTTACAACATTTGTTAGGCTGCTCATGGTTATTTTTGGCCGATTGA 6505 Query 170128 -ATCTTCCAGTATGCT----TCATTCAACAACTCAA-GAAGTCTACACTTCTTC-CTAGC 170180 |||||||| |||||| |||| ||||||||| | | |||| |||||| |||| Sbjct 6504 CATCTTCCAATATGCTAGTTTCAT-CAACAACTCCTCGTTCTTTACATTTCTTCTCTAGG 6446 Query 170181 AGTTTT--CCCTGTTGTATG-TGTATG-GTTAACCT-CTATGGGTATCTGCA-CAATGGC 170234 | || ||| || ||| | | | || ||| || | || | ||| | || | | ||||| Sbjct 6445 CGGCTTGGCCCGGTAGTAGGGTATTTGTGTTTACTTGCTTTAGGTTTATGTAGCTATGGC 6386 Query 170235 ATTCAACTTGAATGGTTTCAACTTTAACC-----AATCA--GTTGTTGAT-GCTA--ACG 170284 |||||| | ||||||||||| || |||| ||||| || |||||| || | ||| Sbjct 6385 TTTCAACCTAAATGGTTTCAATTTCAACCCCCCAAATCAGTGTAGTTGATAGCAAGGACG 6326 Query 170285 GAAAAATCGTCCCAACATGGGGTGATGTTCTAAACAG-AGCAAACTTGGGTATGGAAGTT 170343 ||| | || |||| |||| || | ||| | | || |||||||||||||||| Sbjct 6325 TGTTAAT--TGAATACTTGGGCTGATATTATTAACCGTGGTAACCTTGGGTATGGAAGTT 6268 Query 170344 AT-GCATGAAAG-AAATGCAC--AC-AACTTCCCACTAGACCTAGCATCTGCTG 170392 || ||||||| | | | || | || |||||||||||||||||||| ||| || Sbjct 6267 ATGGCATGAACGTACACGCTCCAACGAACTTCCCACTAGACCTAGCTGCTGTTG 6214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579156254350400