Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq1269 129 7e-25 >seq1269 Length=73620 Score = 129 bits (142), Expect = 7e-25 Identities = 317/450 (70%), Gaps = 43/450 (10%) Strand=Plus/Minus Query 168445 TTTAGTGCTATGCACGGAAG-TTTGGTTACTTCTTCTCTCGTT-AGAGAGACGACTGAAA 168502 |||||||||||||| || |||||| |||||| | | | || || || || |||| Sbjct 6661 TTTAGTGCTATGCATGGTTCCTTTGGTAACTTCTAGTTTGTATCAGGGAAACCACAGAAA 6602 Query 168503 CCGAATCC-CAAAACTACGGTTA---CAAGTTCGGAC-AAGAAGAAGA-AACATACAACA 168556 ||||| | || | ||||| || ||||| | |||||||||| ||| ||||||| Sbjct 6601 ATGAATCTGCTAATGCAAGGTTAGGCCAGATTCGGTCCAAGAAGAAGAGAACTTACAACA 6542 Query 168557 TCG--TAGCC-GCTCATGGTTACTTC-GGTCGTTTGA--TCTTCCAATACGCT----TCA 168606 | ||| | ||||||||||| || || || |||| |||||||||| ||| ||| Sbjct 6541 TTTGTTAGGCTGCTCATGGTTATTTTTGGCCGATTGACATCTTCCAATATGCTAGTTTCA 6482 Query 168607 TTCAACAACTCC-CGCTCCTTGCACTTCTTCCTT--GCTGCATGGCCTGTT-GTCGGC-A 168661 | |||||||||| || || || || |||||| | || || ||||| | | || || | Sbjct 6481 T-CAACAACTCCTCGTTCTTTACATTTCTTCTCTAGGCGGCTTGGCCCGGTAGTAGGGTA 6423 Query 168662 TCTG-GTTCACCGCCCTT-GGCGTCTCCA-CGATGGCATTCAACCTGAACGGTTTCAACT 168718 | || ||| || | || || | | | | ||||| |||||||| || |||||||| | Sbjct 6422 TTTGTGTTTACTTGCTTTAGGTTTATGTAGCTATGGCTTTCAACCTAAATGGTTTCAATT 6363 Query 168719 TCAACCAGTCCATCC-------TTGATGGTCAGGGTCGTGTG--TTGAACACCTGGGCAG 168769 |||||| | | | ||||| | || || ||||| ||||| || ||||| | Sbjct 6362 TCAACCCCCCAAATCAGTGTAGTTGATAG-CAAGGACGTGTTAATTGAATACTTGGGCTG 6304 Query 168770 ATGTTCTGAACCGCGCTGGTCT-GGGTATGGAAGTTATG-CATGAGCGTA-ACGCAC--A 168824 || || | ||||| | | || |||||||||||||||| ||||| |||| |||| | | Sbjct 6303 ATATTATTAACCGTGGTAACCTTGGGTATGGAAGTTATGGCATGAACGTACACGCTCCAA 6244 Query 168825 C-AACTTCCCACTCGATCTTGCTGCTGCTG 168853 | ||||||||||| || || ||||||| || Sbjct 6243 CGAACTTCCCACTAGACCTAGCTGCTGTTG 6214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574417517014800