Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq1269 138 1e-27 >seq1269 Length=73620 Score = 138 bits (152), Expect = 1e-27 Identities = 331/468 (71%), Gaps = 42/468 (9%) Strand=Plus/Minus Query 164349 GTATTTGGCGGTTCTCTG-TTCAGTGCAATGCACGGTTC-TCTGGTTACTTCTTCGCTGG 164406 ||||| |||| | | || || ||||| ||||| ||||| | |||| |||||| || Sbjct 6680 GTATTCGGCGCTGCCCTACTTTAGTGCTATGCATGGTTCCTTTGGTAACTTCTAGTTTGT 6621 Query 164407 TTC-GTGAAACCACCGAAACTGAGTCCCAGAACT-ATGGTTA---CAAGTTTGGTC-AAG 164460 || | |||||||| |||| ||| || || | ||||| || || |||| ||| Sbjct 6620 ATCAGGGAAACCACAGAAAATGAATCTGCTAATGCAAGGTTAGGCCAGATTCGGTCCAAG 6561 Query 164461 AAGAAGA-AACATACAACATT-GTT--GCCGCTCACGGTTACTTT-GGTCGTCTGA--TC 164513 ||||||| ||| ||||||||| ||| || ||||| ||||| ||| || || ||| || Sbjct 6560 AAGAAGAGAACTTACAACATTTGTTAGGCTGCTCATGGTTATTTTTGGCCGATTGACATC 6501 Query 164514 TTCCAATACGCT----TCATTCAACAACTCC-CGTTCCTTGCACTTCTTCCTT--GCTGC 164566 |||||||| ||| |||| |||||||||| ||||| || || |||||| | || || Sbjct 6500 TTCCAATATGCTAGTTTCAT-CAACAACTCCTCGTTCTTTACATTTCTTCTCTAGGCGGC 6442 Query 164567 ATGGCCTGTTGTT--GGCATCTG-GTTCACC-GCACTTGGTGTTTCCA-CGATGGCATTC 164621 ||||| | | | || || || ||| || || | ||| | | | | ||||| ||| Sbjct 6441 TTGGCCCGGTAGTAGGGTATTTGTGTTTACTTGCTTTAGGTTTATGTAGCTATGGCTTTC 6382 Query 164622 AACCTGAACGGTTTCAACTTCAACCAGTCCA-TCA---TCGATGGT--CAGGGTCGTGTG 164675 ||||| || |||||||| ||||||| | | ||| | | || | || || ||||| Sbjct 6381 AACCTAAATGGTTTCAATTTCAACCCCCCAAATCAGTGTAGTTGATAGCAAGGACGTGTT 6322 Query 164676 C--TCAACACTTGGGCAGACGTTCTCAACCGCGCTGGTCT-GGGTATGGAAGTTAT-GCA 164731 | || |||||||| || || | ||||| | | || ||||||||||||||| ||| Sbjct 6321 AATTGAATACTTGGGCTGATATTATTAACCGTGGTAACCTTGGGTATGGAAGTTATGGCA 6262 Query 164732 CGAGCGTA-ACGCTC--AC-AACTTCCCTCTGGATCTCGCTGCTGCTG 164775 || |||| |||||| || |||||||| || || || ||||||| || Sbjct 6261 TGAACGTACACGCTCCAACGAACTTCCCACTAGACCTAGCTGCTGTTG 6214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556870430216400