Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq1269 102 9e-17 >seq1269 Length=73620 Score = 102 bits (112), Expect = 9e-17 Identities = 307/443 (69%), Gaps = 41/443 (9%) Strand=Plus/Minus Query 169079 GCAATGCATGGTTCACTTG-TAACATCTTCTCTA-ATCAGAGAGACTACTGAGGAAGAAT 169136 || ||||||||||| ||| |||| ||| | | ||||| || || || || | |||| Sbjct 6655 GCTATGCATGGTTCCTTTGGTAACTTCTAGTTTGTATCAGGGAAACCACAGAAAATGAAT 6596 Query 169137 CTCAGAACT-ATGGTTA---CAAGTTCGGTC-AAGAAGAAGA-AACCTATAATATT-GTT 169189 || || | ||||| || ||||||| |||||||||| ||| || || ||| ||| Sbjct 6595 CTGCTAATGCAAGGTTAGGCCAGATTCGGTCCAAGAAGAAGAGAACTTACAACATTTGTT 6536 Query 169190 --GCAGCACATGGATACTTC-GGTAGATTAA--TCTTCCAGTATGCAAGTTTCA---ACA 169241 || || ||||| || || || |||| | ||||||| ||||| ||||||| ||| Sbjct 6535 AGGCTGCTCATGGTTATTTTTGGCCGATTGACATCTTCCAATATGCTAGTTTCATCAACA 6476 Query 169242 ACTCAA-GAAGTCTTCACTTCTTC-CTAGCAGTGTT--CCCAGTTGTATG-TGTATG-GT 169295 |||| | | | || |||||| |||| | || ||| || ||| | | | || || Sbjct 6475 ACTCCTCGTTCTTTACATTTCTTCTCTAGGCGGCTTGGCCCGGTAGTAGGGTATTTGTGT 6416 Query 169296 TAACCT-CTATGGGTATCTGTA-CAATGGCATTCAACTTGAACGGATTTAACTTTAACC- 169352 | || | || | ||| | |||| | ||||| |||||| | || || || || || |||| Sbjct 6415 TTACTTGCTTTAGGTTTATGTAGCTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCC 6356 Query 169353 ----AATCAGTTGTAGATGTTAACGGTAA---GATCATTCC-TACATGGGGTGACGTACT 169404 ||||||| |||| || || | | | | ||| ||| |||| ||| | | Sbjct 6355 CCCAAATCAGT-GTAGTTGATAGCAAGGACGTGTTAATTGAATACTTGGGCTGATATTAT 6297 Query 169405 TAACAGAGCAAACCTTGG-TATGGAAGTAATG-CATGAGCGTA-ACGCTC--AC-AACTT 169458 |||| | | |||||||| ||||||||| ||| ||||| |||| |||||| || ||||| Sbjct 6296 TAACCGTGGTAACCTTGGGTATGGAAGTTATGGCATGAACGTACACGCTCCAACGAACTT 6237 Query 169459 CCCACTAGACTTAGCATCTGCTG 169481 |||||||||| |||| ||| || Sbjct 6236 CCCACTAGACCTAGCTGCTGTTG 6214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564386496388800