Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq886 132 6e-26 seq397 120 4e-22 seq1269 95.1 1e-14 >seq886 Length=72608 Score = 132 bits (146), Expect = 6e-26 Identities = 145/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 157911 ACCCCCAGTCATACAGCGAAACGTTCTTGAGAATCCTAGTTGGTACACATCTTACACTCC 157970 ||| ||||| || ||| || | | |||||||| |||||| || ||||| || Sbjct 15470 ACCTCCAGTGATTTTGCGTAATATAATGGAGAATCCAGCTTGGTATACTCAATACACACC 15411 Query 157971 CTATCAAGCTGAGATATCTCAGGGAAGATTGGAAGCTTTATTCAATTACCAAACGCTCAT 158030 |||||||||||||| || || |||||| | ||| | || | |||||||||||| | || Sbjct 15410 TTATCAAGCTGAGATCTCACAAGGAAGACTCGAATCGTTGCTTAATTACCAAACGGTGAT 15351 Query 158031 CACAGAACTCACAGGACTACCGATAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGC 158090 ||| || ||||| || ||||| || ||||||| || | | ||||||| |||||||| Sbjct 15350 CACTGATCTCACTGGTCTACCAATGTCAAACGCTTCGTTGCTTGATGAAGGCACTGCAGC 15291 Query 158091 AGCAGAAGCAATG 158103 ||||||||||||| Sbjct 15290 AGCAGAAGCAATG 15278 Score = 96.9 bits (106), Expect = 4e-15 Identities = 143/201 (71%), Gaps = 4/201 (2%) Strand=Plus/Minus Query 158447 GGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACAGACA 158506 |||||||| |||| ||||| || || |||||||||||||| || || || || || | Sbjct 14937 GGTTTGGTGTTCCCATGGGTTATGGTGGTCCTCATGCTGCTTTTTTGGCTACTTCACAAG 14878 Query 158507 AGTATAAGAGAAAGATACCTGGCAGAATTGTAG--GTCAGTCAGTAGATAGCGAAGGTAA 158564 |||||||||||| ||| ||||| || ||| | | || ||| || ||| || || Sbjct 14877 AGTATAAGAGAATGATGCCTGGGAGGATTATTGGTGTTAGT--GTTGATTCTTCTGGGAA 14820 Query 158565 TAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAGCAAC 158624 |||| | | | || | ||||||||||| || ||||| | || |||||||| || Sbjct 14819 GCAAGCTTTGCGTATGGCTATGCAGACTAGAGAACAACATATTCGCAGGGACAAAGCTAC 14760 Query 158625 CAGTAACATCTGCACAGCACA 158645 || ||||| || || || || Sbjct 14759 TAGCAACATTTGTACCGCTCA 14739 >seq397 Length=240941 Score = 120 bits (132), Expect = 4e-22 Identities = 152/207 (73%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 158443 CAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 158502 |||||||||||| |||| ||||| ||||| |||||||||||||| ||||| || || || Sbjct 233478 CAAAGGTTTGGTGTTCCAATGGGTTACGGTGGTCCTCATGCTGCGTTCTTGGCTACTTCA 233537 Query 158503 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGG--TCAGTCAGTAGATAGCGAAG 158560 | |||||||||||| ||| ||||| || ||| | || | ||| || ||| || Sbjct 233538 CAAGAGTATAAGAGAATGATGCCTGGGAGGATTATTGGTATTAGT--GTTGATTCTTCAG 233595 Query 158561 GTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAG 158620 | || ||| | | || | ||||||||||| || ||||| || || ||||||| Sbjct 233596 GAAAGCCAGCTCTGCGTATGGCTATGCAGACTAGAGAACAACATATAAGGAGGGACAAAG 233655 Query 158621 CAACCAGTAACATCTGCACAGCACAAG 158647 | || || |||||||| || || |||| Sbjct 233656 CCACTAGCAACATCTGTACTGCTCAAG 233682 Score = 104 bits (114), Expect = 3e-17 Identities = 122/165 (74%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 157939 GAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGA 157998 ||||||||| ||||||||| |||||||| |||||||||||||| ||||| || | Sbjct 232977 GAGAATCCTGCTTGGTACACTCAATACACTCCTTATCAAGCTGAGATCTCTCAAGGTCGT 233036 Query 157999 TTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGACTACCGATAGCA 158058 | ||| | | |||||| ||| ||| | ||||| || ||||| || || || || | Sbjct 233037 CTTGAATCGCTGCTCAATTTCCAGACGATGATCACTGACCTCACTGGGCTTCCTATGTCT 233096 Query 158059 AACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 158103 ||||| || || ||||||||| ||||| || || || || ||| Sbjct 233097 AACGCCTCGCTTCTAGATGAAGGCACTGCTGCTGCGGAGGCTATG 233141 Score = 93.3 bits (102), Expect = 5e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 159693 TGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGG 159752 ||| || ||||| || ||||| || | || ||||| ||||||||||| ||||||||||| Sbjct 235427 TGGAGCGGATGTGTGCCATCTCAATCTCCACAAGACCTTCTGTATTCCTCATGGAGGTGG 235486 Query 159753 AGGTCCTGGCGTAGGTCCTATTGGTGTAGCAAAACATCTCACACCATTT 159801 |||||||| | ||||| |||||||| |||||| | |||||||| Sbjct 235487 TGGTCCTGGTATGGGTCCCATTGGTGTGAAGAAACATTTGGCACCATTT 235535 >seq1269 Length=73620 Score = 95.1 bits (104), Expect = 1e-14 Identities = 247/352 (70%), Gaps = 40/352 (11%) Strand=Plus/Minus Query 172492 CAAGAAGAAGA-AACATACAACATAG--TAG-CAGCACACGGTTACTTTGGTCGTCTT-- 172545 ||||||||||| ||| |||||||| ||| | || || ||||| ||| | | || Sbjct 6564 CAAGAAGAAGAGAACTTACAACATTTGTTAGGCTGCTCATGGTTATTTTTGGCCGATTGA 6505 Query 172546 -ATCTTCCAGTATGCTTCTTTCA---ACAACTCAA-GAAGTCTTCACTTCTTC-CTAGCA 172599 |||||||| |||||| ||||| ||||||| | | | || |||||| |||| Sbjct 6504 CATCTTCCAATATGCTAGTTTCATCAACAACTCCTCGTTCTTTACATTTCTTCTCTAGGC 6445 Query 172600 GTTTT--CCCTGTTGTATG-TGTATG-GTTAACCT-CTATGGGTATCTGTA-CAATGGCA 172653 | || ||| || ||| | | | || ||| || | || | ||| | |||| | ||||| Sbjct 6444 GGCTTGGCCCGGTAGTAGGGTATTTGTGTTTACTTGCTTTAGGTTTATGTAGCTATGGCT 6385 Query 172654 TTCAACCTTAACGGTTTCAACTTCAACC-----AATCAGTTGTAGATGCTA------ACG 172702 |||||||| || |||||||| ||||||| ||||||| |||| || || ||| Sbjct 6384 TTCAACCTAAATGGTTTCAATTTCAACCCCCCAAATCAGT-GTAGTTGATAGCAAGGACG 6326 Query 172703 -GTAAGATTGTTCCTACATGGGGTGACGTTCTTAACAGAGCAAACCTAGG-TATGGAAGT 172760 || | |||| ||| |||| ||| || ||||| | | ||||| || ||||||||| Sbjct 6325 TGTTA-ATTGAA--TACTTGGGCTGATATTATTAACCGTGGTAACCTTGGGTATGGAAGT 6269 Query 172761 TAT-GCATGAAAG-AAATGCAC--AC-AACTTCCCATTAGACCTTGCTTCTG 172807 ||| ||||||| | | | || | || ||||||||| ||||||| ||| ||| Sbjct 6268 TATGGCATGAACGTACACGCTCCAACGAACTTCCCACTAGACCTAGCTGCTG 6217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587993791501600