Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq504 125 8e-24 >seq504 Length=87311 Score = 125 bits (138), Expect = 8e-24 Identities = 335/489 (69%), Gaps = 50/489 (10%) Strand=Plus/Minus Query 163949 GTTTCATGCT-TCGG--CAATTT-GAACTTGCTCGCCTGATTGGAATCAGACCCTAC-AA 164003 |||||||| | |||| |||||| |||||||||| ||| | | || ||| || || Sbjct 51378 GTTTCATGTTATCGGTTCAATTTTGAACTTGCTCATCTGCCTCAATTCGCACCTTATTAA 51319 Query 164004 TGCGATTGCTTTCTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTC---TCATCTACCC 164060 ||| || || ||||||||||| |||||||| || ||| |||||| | | || || || Sbjct 51318 TGCAATCGCATTCTCTGGTCCAATTGCTGTTTT-GTTTCTGTCTTCCGAGTAATTTATCC 51260 Query 164061 TC--TGGGTCAATCAAGTTGGTTCTTCGCTCCATCTTTTGGAGTGGCAGCAATCTTCAGA 164118 | | |||||||| || |||||| || || |||| | | || || || Sbjct 51259 ACGTTAGGTCAATCTGGT--GTTCTTTGCGCCTATTTTT--------ACCTATATTTCGA 51210 Query 164119 TTCCTCTTATTCCTTC-AAGGA-TTTCATAACTGGACTTTGAACCCCTTCCATATGATGG 164176 ||| || | || ||| |||| |||||||| ||||| |||||||| || |||||||||| Sbjct 51209 TTCATCCTTTTTTTTCCAAGGCGTTTCATAATTGGACATTGAACCCATTTCATATGATGG 51150 Query 164177 G-AGTTGCTGGTATACT--AGGCGGAGCATTGCTAT-CTGCTATTCACGGAGTCAC-AGT 164231 | ||| || ||| |||| |||| || |||||| | |||||||| || | || || Sbjct 51149 GAAGTCGCCGGTGTACTGGCGGCGCGGCTCTGCTATGCGGCTATTCATGGTGCTACTGGT 51090 Query 164232 TGAAAATACATTGTATGAAGATGGAGAACAA-------GCAAACA-CCTTTAAG--GCGT 164281 |||||||| || | ||||||||| | | ||| | | | || | || | Sbjct 51089 AGAAAATACTTTATTTGAAGATGGTGGGGGATTTTGTGGCAGAGATACATTCCGCTGCTT 51030 Query 164282 TTGATTCGACACAGGAAGAAGAGACTTA-TTCTATGGTC-ACTGC--AAACCGCTTCTGG 164337 || | | || || | ||||| ||||| ||| |||||| || || | |||||| ||| Sbjct 51029 TTAACCCAACTCAAGCCGAAGAAACTTATTTCAATGGTCAACCGCTACACCCGCTTTTGG 50970 Query 164338 TCGCAGATC--TTCGGTGTTGCGTTTTCTAA--CAAGCGGTGGCTTCA----TTTTTTCA 164389 || || ||| || || ||||| || || || || || |||||||| | || ||| Sbjct 50969 TCACAAATCTTTTGGGGGTTGCTTTATCCAATTTAAACGTTGGCTTCACATTTCTTGTCA 50910 Query 164390 TGTTGTTTG 164398 |||| |||| Sbjct 50909 TGTTATTTG 50901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557529565862000