Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq504 104 3e-17 >seq504 Length=87311 Score = 104 bits (114), Expect = 3e-17 Identities = 266/380 (70%), Gaps = 35/380 (9%) Strand=Plus/Minus Query 168762 GGAGGACTCTGGGCTTT-TGTGGC-GCTCCACGGGGCTTTCGCTCTAATCGGT--TTCAT 168817 || || || |||||||| | |||| |||| |||| ||||||| |||| ||| ||||| Sbjct 51430 GGTGGTCTGTGGGCTTTGTCTGGCTGCTC-ACGGCCCTTTCGCATTAATAGGTGTTTCAT 51372 Query 168818 GCT-TCG--TCAGTTT-GAACTGGCACGTCT-CATCGGTATCCGTCCCTAC-AATGCTAT 168871 | | ||| ||| ||| ||||| || | ||| | || | || || || ||||| || Sbjct 51371 GTTATCGGTTCAATTTTGAACTTGCTCATCTGCCTCAAT-TCGCACCTTATTAATGCAAT 51313 Query 168872 TGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTC---TCATCTACCCTC--TG 168926 || ||||||||||| || |||||||| ||| ||||| | | || || || | | Sbjct 51312 CGCATTCTCTGGTCCAATTGCTGTTTT-GTTTCTGTCTTCCGAGTAATTTATCCACGTTA 51254 Query 168927 GGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTT 168986 |||||||| || ||| || || || | ||| | | | || || |||||| | Sbjct 51253 GGTCAATCTGGT--GTTCTTTGCGCC-TATTT-------TTACCTATATTTCGATTCATC 51204 Query 168987 CTCTTCCTAC-AAGGA-TTCCATAACTGGACACTGAATCCATTTCATATGATGGG-TGTA 169043 || || | | |||| || ||||| |||||| |||| ||||||||||||||||| || Sbjct 51203 CTTTTTTTTCCAAGGCGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAAGTC 51144 Query 169044 GCAGGTATTTTG--GGAGGAGCCTTGCT-TTCTGCCATTCATGGTGTTAC-AGTAGAGAA 169099 || ||| | || || | || |||| | | || |||||||||| ||| ||||| || Sbjct 51143 GCCGGTGTACTGGCGGCGCGGCTCTGCTATGCGGCTATTCATGGTGCTACTGGTAGAAAA 51084 Query 169100 TACTCTGTATCAAGATGGTG 169119 |||| | | | ||||||||| Sbjct 51083 TACTTTATTTGAAGATGGTG 51064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560553270644000