Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq1269 120 4e-22 seq504 102 1e-16 >seq1269 Length=73620 Score = 120 bits (132), Expect = 4e-22 Identities = 257/360 (71%), Gaps = 37/360 (10%) Strand=Plus/Minus Query 182460 TTCGGTC-AAGAAGAAGAGACCT-ATAACATC-GTT--GCAGCCCATGGCTACTTC-GGT 182513 ||||||| |||||||||||| || | ||||| ||| || || ||||| || || || Sbjct 6571 TTCGGTCCAAGAAGAAGAGAACTTACAACATTTGTTAGGCTGCTCATGGTTATTTTTGGC 6512 Query 182514 CGTTTGA--TCTTCCAATACGCA----TCATTCAACAACTCC-CGTTCCTTGCACTTCTT 182566 || |||| |||||||||| || |||| |||||||||| ||||| || || ||||| Sbjct 6511 CGATTGACATCTTCCAATATGCTAGTTTCAT-CAACAACTCCTCGTTCTTTACATTTCTT 6453 Query 182567 CCTT--GCTGCATGGCCTGTTGTT--GGAATCTG-GTTCACC-GCACTTGGTGTCTCCA- 182619 | | || || ||||| | | | || || || ||| || || | ||| | | | Sbjct 6452 CTCTAGGCGGCTTGGCCCGGTAGTAGGGTATTTGTGTTTACTTGCTTTAGGTTTATGTAG 6393 Query 182620 CGATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCC-------TTGATGGT 182672 | ||||| |||||||| || |||||||| ||||||| | | | ||||| | Sbjct 6392 CTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCCCCCAAATCAGTGTAGTTGATAG- 6334 Query 182673 CAGGGTCGTGTCCTT--AACACTTGGGCAGATGTATTGAACCGTGCTGGTCTTGG-TATG 182729 || || ||||| | || |||||||| ||| | | ||||||| | ||||| |||| Sbjct 6333 CAAGGACGTGTTAATTGAATACTTGGGCTGATATTATTAACCGTGGTAACCTTGGGTATG 6274 Query 182730 GAAGTTATG-CATGAGCGTA-ACGCAC--AC-AACTTCCCACTAGATCTTGCTGCTGCTG 182784 ||||||||| ||||| |||| |||| | || |||||||||||||| || ||||||| || Sbjct 6273 GAAGTTATGGCATGAACGTACACGCTCCAACGAACTTCCCACTAGACCTAGCTGCTGTTG 6214 >seq504 Length=87311 Score = 102 bits (112), Expect = 1e-16 Identities = 292/431 (68%), Gaps = 45/431 (10%) Strand=Plus/Minus Query 183562 AATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGTGTATTCC---TTATCTAT 183618 ||||| || || ||||||||||| ||||||| |||||| ||| |||| | || ||| Sbjct 51320 AATGCAATCGCATTCTCTGGTCCAATTGCTG-TTTTGTTTCTGTCTTCCGAGTAATTTAT 51262 Query 183619 CCAC--TGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATCTTTA 183676 |||| | ||||| ||| ||||||||| |||| ||| | | || ||| Sbjct 51261 CCACGTTAGGTCAATCT--GGTGTTCTTTGCGCCTATTTT--------TACCTATATTTC 51212 Query 183677 GATTCCTATTGTTCCTTC--AGGGTTTCCACAACTGGACGTTAAACCCCTTCCATATGAT 183734 ||||| | | || ||| ||| || || || ||||| || ||||| || |||||||| Sbjct 51211 GATTCATCCTTTTTTTTCCAAGGCGTTTCATAATTGGACATTGAACCCATTTCATATGAT 51152 Query 183735 GGG-AGTTGCTGGTATACT--AGGAGGAGCACTACTCAG-TGCTATCCATGGTGTCAC-A 183789 ||| ||| || ||| |||| || | || || || | ||||| ||||||| || Sbjct 51151 GGGAAGTCGCCGGTGTACTGGCGGCGCGGCTCTGCTATGCGGCTATTCATGGTGCTACTG 51092 Query 183790 GTAGAGAATACATTGTATGAAGATGGAGAACAA-------GC--AAACACATT-CAAGGC 183839 ||||| ||||| || | ||||||||| | | || | | ||||| | || Sbjct 51091 GTAGAAAATACTTTATTTGAAGATGGTGGGGGATTTTGTGGCAGAGATACATTCCGCTGC 51032 Query 183840 ATTTGATTCCACTCAAGAAGAAGAGACGTA-TTCTATGGT-TACAGC--GAATCGTTTCT 183895 ||| | | ||||||| ||||| || || ||| ||||| || || | || || | Sbjct 51031 TTTTAACCCAACTCAAGCCGAAGAAACTTATTTCAATGGTCAACCGCTACACCCGCTTTT 50972 Query 183896 GGTCACAAATC--TTCGGGGTTGCGTTTAGCAA--TAAGCGTTGGTTGCAC--TTCT--T 183947 ||||||||||| || |||||||| || ||| ||| |||||| | ||| |||| | Sbjct 50971 GGTCACAAATCTTTTGGGGGTTGCTTTATCCAATTTAAACGTTGGCTTCACATTTCTTGT 50912 Query 183948 TATGTTGTTTG 183958 ||||| |||| Sbjct 50911 CATGTTATTTG 50901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611636283178000