Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq1269 116 4e-21 seq504 113 5e-20 >seq1269 Length=73620 Score = 116 bits (128), Expect = 4e-21 Identities = 250/348 (72%), Gaps = 32/348 (9%) Strand=Plus/Minus Query 165436 CAAGAAGAAGAGACCT-ATAACATC-GTC--GCTGCCCACGGGTACTTC-GGTCGTCT-- 165488 ||||||||||||| || | ||||| || ||||| || || || || || || | Sbjct 6564 CAAGAAGAAGAGAACTTACAACATTTGTTAGGCTGCTCATGGTTATTTTTGGCCGATTGA 6505 Query 165489 CATTTTCCAATACGCA---TCCTTCAACAATTCC-CGTTCGCTGCACTTCTTC-CTCG-C 165542 ||| |||||||| || | | ||||||| ||| ||||| | || |||||| || | | Sbjct 6504 CATCTTCCAATATGCTAGTTTCATCAACAACTCCTCGTTCTTTACATTTCTTCTCTAGGC 6445 Query 165543 AGCATGGCCTG-TAGTTGG-TATCTG-GTTCACT-GCTCTTGGTGTTAGCACC-ATGGCA 165597 || ||||| | |||| || ||| || ||| ||| ||| | ||| | | | | ||||| Sbjct 6444 GGCTTGGCCCGGTAGTAGGGTATTTGTGTTTACTTGCTTTAGGTTTATGTAGCTATGGCT 6385 Query 165598 TTCAACCTGAACGGTTTCAACTTCAACC-----AGTC--TATTGTTGATAGTCAGAACAA 165650 |||||||| || |||||||| ||||||| | || | | |||||||| || || Sbjct 6384 TTCAACCTAAATGGTTTCAATTTCAACCCCCCAAATCAGTGTAGTTGATAGCAAGGACGT 6325 Query 165651 AATCATCCC-TACTTGGGCTGACGTTCTGAACCGTGCTGGTCT-GGGTATGGAAGTTAT- 165707 | || |||||||||||| || | ||||||| | || ||||||||||||||| Sbjct 6324 GTTAATTGAATACTTGGGCTGATATTATTAACCGTGGTAACCTTGGGTATGGAAGTTATG 6265 Query 165708 GCATGAGCGTA-ACGCTC--AC-AACTTCCCCCTCGACCTCGCTGCTG 165751 |||||| |||| |||||| || |||||||| || ||||| ||||||| Sbjct 6264 GCATGAACGTACACGCTCCAACGAACTTCCCACTAGACCTAGCTGCTG 6217 >seq504 Length=87311 Score = 113 bits (124), Expect = 5e-20 Identities = 331/484 (68%), Gaps = 47/484 (10%) Strand=Plus/Minus Query 166440 GGAGGGCTTTGGGCCTT-TGTTGCTCTCCACGGTGCTTTTGCCCTAATTGGT--TTCATG 166496 || || || ||||| || | | ||| ||||| |||| || |||| ||| |||||| Sbjct 51430 GGTGGTCTGTGGGCTTTGTCTGGCTGCTCACGGCCCTTTCGCATTAATAGGTGTTTCATG 51371 Query 166497 CT-TCGGC---AGTTTGAAATCGCTCGTCTAGTAGGTATTCGT-CCGTAC-AATGCAATC 166550 | |||| | |||||| | |||| ||| | ||||| || || ||||||||| Sbjct 51370 TTATCGGTTCAATTTTGAACTTGCTCATCT-GCCTCAATTCGCACCTTATTAATGCAATC 51312 Query 166551 GCTTTTTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTC---TCATCTACCCTC--TGG 166605 || || |||||||| |||||||| || ||| |||||| | | || || || | | | Sbjct 51311 GCATTCTCTGGTCCAATTGCTGTTTT-GTTTCTGTCTTCCGAGTAATTTATCCACGTTAG 51253 Query 166606 GTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTCC 166665 ||||||| || ||| || || || | ||| | | | || || |||||| ||| Sbjct 51252 GTCAATCTGGT--GTTCTTTGCGCC-TATTT-------TTACCTATATTTCGATTCATCC 51203 Query 166666 TTTTCCTTC-AAGGA-TTCCACAACTGGACACTGAACCCATTTCATATGATGGG-TGTAG 166722 |||| ||| |||| || || || |||||| |||||||||||||||||||||| || | Sbjct 51202 TTTTTTTTCCAAGGCGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAAGTCG 51143 Query 166723 CAGGTATTCT--CGGTGGTGCATTGCT-TTCTGCCATCCATGGTGTTAC-AGTAGAGAAC 166778 | ||| | || ||| | || |||| | | || || ||||||| ||| ||||| || Sbjct 51142 CCGGTGTACTGGCGGCGCGGCTCTGCTATGCGGCTATTCATGGTGCTACTGGTAGAAAAT 51083 Query 166779 ACTCTGTATCAAGATGGTG-------AACAGGC--AAATAC-TTTCAAGGCATTCGACTC 166828 ||| | | | ||||||||| ||| | |||| || | || || || | Sbjct 51082 ACTTTATTTGAAGATGGTGGGGGATTTTGTGGCAGAGATACATTCCGCTGCTTTTAACCC 51023 Query 166829 TACTCAAGAGGAAGAAACCTA-TTCAATGGT-TACAGC--AAACCGCTATTGGTCTCAGA 166884 ||||||| |||||||| || ||||||||| || || | ||||| |||||| || | Sbjct 51022 AACTCAAGCCGAAGAAACTTATTTCAATGGTCAACCGCTACACCCGCTTTTGGTCACAAA 50963 Query 166885 TCTT 166888 |||| Sbjct 50962 TCTT 50959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563605772614400