Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq863 100 2e-16 seq516 93.3 3e-14 seq3586 89.7 3e-13 seq275 89.7 3e-13 seq683 87.8 1e-12 seq2666 84.2 1e-11 >seq863 Length=117140 Score = 100 bits (110), Expect = 2e-16 Identities = 143/199 (72%), Gaps = 8/199 (4%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| | || | || | || || |||||||| ||||| || Sbjct 77670 TTCCTTCTGGATGTTGTAGTCGGCGAGAGTACGGCCGTCTTCGAGCTGTTTCCCGGCGAA 77729 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | ||| |||||||| | || | ||||||||||| |||||| |||||| | Sbjct 77730 AATCAATCGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCTTGGATCTTCGCTTTGAC--A 77787 Query 34910 TGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCT 34965 | | ||||| ||| || ||| || || | ||| ||||| || ||||| || || | Sbjct 77788 T--TGTCGATGGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCTTACCCGTTAGGGTTT 77845 Query 34966 TCACAAAGATCTGCATATT 34984 |||| ||||||||||| || Sbjct 77846 TCACGAAGATCTGCATCTT 77864 >seq516 Length=37039 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 34778 GTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTG 34837 ||||| ||| ||| || || ||||| ||||| | ||| | || |||| || ||||| Sbjct 10013 GTGAAGTGTTGATTCCTTTTGGATGTTGTAGTCTGCAAGAGTACGACCATCCTCAAGCTG 10072 Query 34838 TTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTT 34897 || || ||||| || |||| ||| |||||| | || | ||| || ||||| |||||| Sbjct 10073 CTTACCAGCAAAGATGAGTCTTTGTTGGTCTGGTGGGATCCCTTCTTTGTCTTGAATCTT 10132 Query 34898 CTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGT 34957 || || |||| | || | |||||| || | ||||||||||| || || Sbjct 10133 TGCCTTTACATTATCTATTGTGTCTGAGCTCTCAACCTCCAAAGTTATGGTTTTGCCAGT 10192 Query 34958 GAGAGTCTTCACAAAGATCTGCAT 34981 || || |||||||| |||||||| Sbjct 10193 TAGGGTTTTCACAAAAATCTGCAT 10216 >seq3586 Length=17470 Score = 89.7 bits (98), Expect = 3e-13 Identities = 150/215 (70%), Gaps = 8/215 (4%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 |||||| |||| ||| || || || ||||| ||||| | || | || |||| || Sbjct 5746 AACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGCGAGTGTGCGACCATCCTC 5687 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| || |||||||| || |||| ||||| || | || | || |||||||| Sbjct 5686 AAGCTGCTTACCGGCAAAGATAAGTCTCTGCTGATCCGGAGGGATACCTTCCTTGTCCTG 5627 Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGG 34947 ||||| ||||| || |||| || ||| | ||| || || | || |||| Sbjct 5626 GATCTTAGCCTTGAC--AT--TATCAATAGTGTCAGAGCTCTCGACCTCCAAAGTGATGG 5571 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 |||| || ||||| ||||| ||||||||||||||| Sbjct 5570 TTTTGCCGGTGAGGGTCTTGACAAAGATCTGCATA 5536 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | || | || |||| || ||||| || || || || Sbjct 5955 TCCTTCTGGATGTTGTAGTCAGCGAGTGTGCGACCATCCTCAAGCTGCTTACCAGCGAAG 5896 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || |||| ||||||||| | || | || |||||||| |||||| ||||| || Sbjct 5895 ATGAGTCTTTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGAATCTTAGCCTTGAC--AT 5838 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 ||||||| || | ||| || || | || |||||||| || ||||| ||||| Sbjct 5837 --TATCGATAGTGTCTGAGCTCTCGACCTCCAACGTAATGGTTTTGCCGGTGAGGGTCTT 5780 Query 34967 CACAAAGATCTGCAT 34981 |||||||||||||| Sbjct 5779 AACAAAGATCTGCAT 5765 Score = 86.0 bits (94), Expect = 4e-12 Identities = 153/218 (70%), Gaps = 8/218 (4%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| || | ||||| || ||| ||||| ||||| ||||| | || | || |||| Sbjct 6205 CAACACAAGGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCAGCCAGTGTGCGACCATC 6146 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 || |||||||| || || || || || | |||||||| | || | ||||| || || Sbjct 6145 CTCAAGCTGTTTCCCAGCGAAGATAAGCCTCTGCTGGTCCGGTGGGATTCCCTCTTTATC 6086 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCA--CCG-GC-CTCAACATCGACGGTTA 34944 ||||| ||||| || | |||||| | | || |||||| |||| ||| | Sbjct 6085 TTGGATCTTAGCCTTGAC--AT--TGTCGATTGTGTCTGAGCTCTCAACCTCGAGGGTAA 6030 Query 34945 TGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||||| || || ||||| || ||||||||||||||| Sbjct 6029 TGGTTTTCCCTGTTAGAGTTTTGACAAAGATCTGCATA 5992 >seq275 Length=143682 Score = 89.7 bits (98), Expect = 3e-13 Identities = 147/211 (70%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || || || ||||| ||||| | | | || |||| || Sbjct 123883 ACCAAGTGCAGAGTCGACTCCTTTTGGATGTTGTAGTCAGCCAATGTGCGACCATCCTCA 123824 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||||||||| || || || || || |||||||| | || | || |||||||| Sbjct 123823 AGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTTGTCCTGG 123764 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | || | ||| | |||||| || | ||| ||||| ||| Sbjct 123763 ATCTTGGCCTTGACGTTGTCGATGGTGTCAGAGCTCTCAACCTCAAGGGTGATGGTCTTT 123704 Query 34953 CCCGT-GAGAGTCTTCACAAAGATCTGCATA 34982 || || ||||||||||| |||||||||||| Sbjct 123703 CCGGTCAAGAGTCTTCACGAAGATCTGCATA 123673 Score = 82.4 bits (90), Expect = 5e-11 Identities = 150/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 34766 CCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG--AAAGGCTTCGT 34823 ||| | ||||||||| | ||| ||| ||||| || || ||||| | |||| | || Sbjct 139087 CCTGAGAACCAAGTGGAGGGTGGATTCCTTCTGGATATTGTAGTCAGCCAAAG--TACGG 139030 Query 34824 TCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCC 34883 | || |||| ||| |||||||| || || || | ||||| || | || | || ||| Sbjct 139029 CCGTCCTCCAACTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGAGGAATACCTTCC 138970 Query 34884 TTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTT 34943 || || ||||| || ||| | || | ||| | || || |||| ||| Sbjct 138969 TTATCCTGGATCTTGGCCTTAACGTTGTCGATGGTGTCAGAGCTTTCCACCTCGAGGGTG 138910 Query 34944 ATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| ||||| ||||||||||| || ||||||||||| Sbjct 138909 ATGGTCTTTCCGGTGAGAGTCTTAACGAAGATCTGCAT 138872 >seq683 Length=32930 Score = 87.8 bits (96), Expect = 1e-12 Identities = 113/152 (74%), Gaps = 7/152 (5%) Strand=Plus/Minus Query 34747 AATCAT--TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTT 34804 |||||| | || || || | ||||||||||||||||||||| |||||||||||||| Sbjct 24651 AATCATAGTCCCACCTCTAAGCCTCAAAACCAAGTGAATTGTAGACTCTTTCTGAATGTT 24592 Query 34805 ATAGTC--CGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGC 34862 || || | |||| |||| |||| || | ||||| || |||||||| | | || Sbjct 24591 GTAATCAGCTAAAG--TTCGACCATCTTCTAATTGTTTACCAGCAAATATCAACCTCTGT 24534 Query 34863 TGGTCTTGCGGCACCCCCTCCTTGTCGCTAAT 34894 || ||| | || | |||||| ||||| ||||| Sbjct 24533 TGATCTGGTGGTATCCCCTCTTTGTC-CTAAT 24503 >seq2666 Length=20083 Score = 84.2 bits (92), Expect = 1e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 34778 GTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTG 34837 ||||| ||| ||| || || ||||||||||| | ||| | | |||| || || || Sbjct 9305 GTGAAGTGTTGATTCCTTTTGGATGTTATAGTCTGCAAGAGTGTGACCATCTTCAAGTTG 9364 Query 34838 TTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTT 34897 || || || || || |||| || |||||| | | ||| || |||||| |||||| Sbjct 9365 CTTGCCAGCGAAGATAAGTCTCTGTTGGTCTGCTTGGATCCCTTCTTTGTCGTGAATCTT 9424 Query 34898 CTGTTTGACGGATGCTATCGAT-TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCG 34956 ||||| || | || | ||| | |||||| || | |||||||||||| || | Sbjct 9425 GGCCTTGACAT-TGTCAACGGTGTCAGAGCTCTCAACTTCTAGGGTTATGGTTTTGCCAG 9483 Query 34957 TGAGAGTCTTCACAAAGATCTGCAT 34981 | || || |||||||| |||||||| Sbjct 9484 TTAGGGTTTTCACAAAAATCTGCAT 9508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324602699953680