Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq422 248 1e-60 seq1401 132 5e-26 seq144 111 2e-19 seq330 100 3e-16 >seq422 Length=101449 Score = 248 bits (274), Expect = 1e-60 Identities = 611/916 (67%), Gaps = 18/916 (2%) Strand=Plus/Plus Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 ||| ||||| || ||||||| || ||||||||||||||||| || | | || || | Sbjct 43473 TTTCTGATACTCACCAACTCTCTTCTCAAAGAAATTAGTTTTACCTTGAAGCGAAATCAA 43532 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAG 18788 ||||| ||||||||||||| | ||| ||| | || | | || || | Sbjct 43533 CTCCATCCAATCAAATGGATTACTCACACCATACACCTTACCGTACCCAGGCTCACCCAA 43592 Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848 || | |||||||||||| | ||||||| |||||| ||||| ||||| || | || Sbjct 43593 TAACCGATCCGCTACAAAATCAATATATTGACTCATCAAATCACGGTTCATCCCAACCAA 43652 Query 18849 TTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAAT 18908 ||| || || || | ||| ||| || || | || || || | ||| Sbjct 43653 CGCGCAAGGAAGCGCGTCGCACACAAACTCTCTCTCAATCTCAACCGCATCACGAACAAT 43712 Query 18909 AGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAA 18968 ||| || | ||||||| || | | || ||||| | || | |||||||| || || Sbjct 43713 TGATTTCACACGATCTTCACTAAGCTTGAATCGAAGAAGACTATAAATCAAACAAGCGAA 43772 Query 18969 ATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCAT 19028 ||||||||| || || |||||||| |||| ||| || || || || | |||||||| Sbjct 43773 ATCACAATGAAGACCTTCGTCTCTTGAGATCAGTTCGTTGGAGAAAGTAAGTCCAGGCAT 43832 Query 19029 CAGTCCTCttttttttAACCAGAATATAGAAGCAAATGAT-CCAGAAAAGAATATACCTT 19087 | |||| ||| || |||||||| |||||| |||| | | || || ||||| ||||||| Sbjct 43833 TAAACCTCGTTTCTTCAACCAGAAAATAGAA-CAAAAGCTACCGGAGAAGAAGATACCTT 43891 Query 19088 CTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACT---AGCATCATTATTATGAATCC 19144 | || |||||||| || | || ||| | | || || ||| | |||| Sbjct 43892 CAACGCAAGCAAAAGCCACGATTCGTTCAGCGAAGCTTTGAG-ATC-----CGTCGATCC 43945 Query 19145 ATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATA 19204 |||||| ||||| | || ||||| ||||||| || || || || || | || | Sbjct 43946 ATTTCATCGCCCATTGTGCTTTCTTCGTTACACAAGGAATGGTTTCAATTGCGCGGAAGA 44005 Query 19205 GATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTG 19264 ||| | ||| | ||||||| | ||| | ||| | | | ||| ||||| || | Sbjct 44006 GATGATCTCTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTATACATCTCAG 44065 Query 19265 AATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTA 19324 | |||||||| || || || || |||||||||||||| | || || | ||||| | Sbjct 44066 AGTGAATATTCTCAATCGCGATTTGAAATCCGTAAAAGGCACGAGCCTCGGAGATCTGAA 44125 Query 19325 CTTCACTACA-AAATC-TTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAA 19382 | || ||| |||| | || | ||| || ||| || || || || || || Sbjct 44126 CATC-GGACATGAATCGGGTTGA-TAGATTCTCTAAAACGATGCCGTCTGATGCGGCGAA 44183 Query 19383 AAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATT---CCAATC 19439 || || | ||| ||||| || || ||| ||| || | |||| | ||| ||| || Sbjct 44184 GAAGGCGAGTACGTGTTTGATGAAGTGTCGTTCGTCGTCGTTTAAGGAATTTTCCCAGTC 44243 Query 19440 ATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTT 19499 | |||||| ||||| ||| |||||||| | ||||| || ||||| || |||||||| Sbjct 44244 GCGATTATCTTGAGATAGATCGACTTCTTCGGCGGTCCAGAATGAAGCTTCGGCTTTTTT 44303 Query 19500 ATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATTTTC 19559 ||||| | |||||| | | ||||||| || || || ||| |||| || | | || Sbjct 44304 GTACATCTCCCATATCTGAGGATATTGGATTGGGAACATACAGAATCGATCTGGAGTTGG 44363 Query 19560 TTTAAGAATAGGTTCC 19575 | | ||||| |||||| Sbjct 44364 TGTTAGAATCGGTTCC 44379 >seq1401 Length=32814 Score = 132 bits (146), Expect = 5e-26 Identities = 162/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 |||||||| || | ||||| ||||||| |||| | || | | |||||||||||||||| Sbjct 17341 CCTCCTTGGTCAACATATCGAGCAGTATCGTTAAATACACGCAGCATTGGGACAATACCA 17282 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || || | ||||| || || ||| ||||||||| | || | |||||| || |||| Sbjct 17281 TTAGAAGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGAATATTATGAACTGAA 17222 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| |||||||| || ||| ||| | ||||||| ||| || || ||||| || Sbjct 17221 ACACCAATACCACCAGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATATG 17162 Query 48540 CCTTCTATACTATCATCTATCATATTTAATAGAAAACAACT 48580 || || || ||||||||| |||| | ||||| ||||| Sbjct 17161 CCCTCAATGCTATCATCTTTCATGCAGATCAGAAAGCAACT 17121 Score = 104 bits (114), Expect = 3e-17 Identities = 142/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 |||||||| ||| || | || |||||||||||| | |||||| ||| || | ||| | Sbjct 17025 AGTTCCTGCATTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTGAGACATCAAATG 16966 Query 48659 ATATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTA 48717 || |||| ||| |||| || ||||| | ||| || || || | || || | ||| | Sbjct 16965 GTAAGTTTTGATAGCAGATTCAATATCATCCTTG-TGAATGCCAACAGCAACCCTCATCA 16907 Query 48718 ACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCA 48777 ||| | |||||| |||||||||| | | | | ||||||||| |||||| |||| | Sbjct 16906 GCATGTGTTGAGGCCTTTCAACAACTGTCCCTTGGACTTTCAAAAGGTATGATCTTTCAA 16847 Query 48778 ATGTTTTAAAACCAAA 48793 |||||||| ||||| Sbjct 16846 GAGTTTTAAACCCAAA 16831 >seq144 Length=115930 Score = 111 bits (122), Expect = 2e-19 Identities = 384/592 (65%), Gaps = 13/592 (2%) Strand=Plus/Minus Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020 || || ||||| || |||| || ||||||| | |||||||| ||||| || |||||| Sbjct 56097 CAAGCGAAATCGCAGTGTAAGCCTTCGTCTCGAGAGATCAATTCGTTAGAGAAGGTTAAA 56038 Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGAT-CCAGAAAAGAA 19079 |||||||| ||||||| ||| || | |||||| || | |||| | | | || || ||||| Sbjct 56037 CCAGGCATGAGTCCTCGTTTCTTAAGCCAGAAGAT-GGAGCAGAAGCTACCGGAGAAGAA 55979 Query 19080 TATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACT---AGCATCATTATT 19136 |||||||| || || ||||| || | || ||| | | | || ||| Sbjct 55978 GATACCTTCAACGCAAGCGAAAGCTACGATTCGTTCAGCGAAGGTTTGAG-ATC-----C 55925 Query 19137 ATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGA 19196 | ||||| ||| ||||| | || ||||| || || || || || || || | Sbjct 55924 GTCGATCCAAGTCATCGCCCACTGTGCTTTCTTCGCGACGCAAGGAATGGTTTCAATCGC 55865 Query 19197 ATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTA 19256 || |||| | ||| | ||||||| | || | ||| | | | ||| || Sbjct 55864 GCGGAAGAGATGATCTCTCTCTTTGTTATCTTTGATGTACGTATCGAGAAGGAGACTATA 55805 Query 19257 CATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGT 19316 ||| || ||||||||||| || || || ||||| |||||||| ||| | || || | Sbjct 55804 CATCTCGGAATGAATATTCTCAATCGCGATCTGGAATCCGTAGAAAGCACGCGCCTCCGA 55745 Query 19317 TATCTGTACTTCACTACA-AAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAG 19375 | || || || ||| |||| | | | ||| || ||| || || || | Sbjct 55744 GACTTGAACATC-TGACATGAATCGTGAAGCGAGATTCTCTAAAACGATACCGTCTGATG 55686 Query 19376 CTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCC 19435 | || || || || | || ||||| || || || |||| | | ||| | | || Sbjct 55685 CGGCGAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCACCGTCGTTTAGATTCTCCC 55626 Query 19436 AATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTT 19495 |||| |||| |||| ||| |||||||| | ||||| || || || || |||| Sbjct 55625 AATCGCGTCCGTCTTGTGATAGATCGACTTCTTCGGCGGTCCAGAACGATGCTTCGGCTT 55566 Query 19496 TTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCT 19547 | |||||||| | ||| || | | || || || ||||| ||| ||||| Sbjct 55565 TCTTATACATCTCCCAGATCTGTGGGTAGTGAATCGGAAACATACAGAATCT 55514 >seq330 Length=201778 Score = 100 bits (110), Expect = 3e-16 Identities = 157/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 |||||| ||||| || | || |||| ||||||| | |||||| | || | || | Sbjct 18415 AGTTCCGGAATTGAAGAGAGTAGGAGTTGCATGAGTGAACCATCGTTGAGACATTAAATG 18356 Query 48659 ATATGTTTCAATAACAGAATCTATATCC-CATTGATGTATACCTATAGATACACGCATTA 48717 || |||| ||| ||||||| ||||| | ||| || || || | ||| || | ||| | Sbjct 18355 GTAAGTTTTGATAGCAGAATCAATATCTTCCTTG-TGGATGCCAACAGAAACCCTCATCA 18297 Query 48718 ACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCA 48777 ||| | |||||| |||||||||| |||| | | ||| || || |||||| | || | Sbjct 18296 GCATGTGTTGAGGCCTTTCAACAACTTTGCCTTGGACTTTTAAGAGGTATGATCTCTCTA 18237 Query 48778 ATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCAT 48819 |||||||||||||| || | |||| ||| || ||||| Sbjct 18236 GCGTTTTAAAACCAAAGTAATCGTATTCAAAATCACGATCAT 18195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562053924128400