Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq1269 127 6e-25 >seq1269 Length=73620 Score = 127 bits (140), Expect = 6e-25 Identities = 258/360 (72%), Gaps = 35/360 (10%) Strand=Plus/Plus Query 35965 CAGCAGCTGCTAGGTCAAGTGGGAAGTT-GT--GTGCGT-TACGCTCATG-CATAACTTC 36019 || |||| |||||||| ||||||||||| || | |||| |||| ||||| ||||||||| Sbjct 6214 CAACAGCAGCTAGGTCTAGTGGGAAGTTCGTTGGAGCGTGTACGTTCATGCCATAACTTC 6273 Query 36020 CATGCCTAA-GTCGGCACGGTTAAGAATGTCAGCCCAAG--TTGGGACGACTCTTCCGTT 36076 ||| || || || ||||||||| ||| |||||||||| || || | ||| || Sbjct 6274 CATACCCAAGGTTACCACGGTTAATAATATCAGCCCAAGTATTCAATTAACACGTCC-TT 6332 Query 36077 GGAATCAAC--GACTGACT-----GATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAG 36129 | |||||| ||||| | | ||||| || || || || || || |||||||||| Sbjct 6333 GCTATCAACTACACTGATTTGGGGGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAG 6392 Query 36130 -TGGAGACTCCCATAGC-GGTAAGC---CATATGCAAGTGACGGGCCAAGCAGCC-AG-G 36182 | | | || | ||| |||| | ||| | | | |||||||||| ||| || | Sbjct 6393 CTACATAAACCTAAAGCAAGTAAACACAAATACCCTACTACCGGGCCAAGCCGCCTAGAG 6452 Query 36183 AAGAAATGTAAACTGCG----GCTATTATTAAAGCTAGCATACTGGAAGATG--AGTC-T 36235 |||||||||||| || | | || | || |||||||| ||||||||| | || Sbjct 6453 AAGAAATGTAAAGAACGAGGAGTTGTTGATGAAACTAGCATATTGGAAGATGTCAATCGG 6512 Query 36236 CCCAAAGTAGCCATGAGCCGC--AAC-AATGTTATACG-TCTCTTCTTCTTGG-CCGAAT 36290 || ||| || |||||||| || ||| |||||| || | |||||||||||||| |||||| Sbjct 6513 CCAAAAATAACCATGAGCAGCCTAACAAATGTTGTAAGTTCTCTTCTTCTTGGACCGAAT 6572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150440446294740