Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq422 181 1e-40 seq144 129 7e-25 >seq422 Length=101449 Score = 181 bits (200), Expect = 1e-40 Identities = 404/599 (67%), Gaps = 12/599 (2%) Strand=Plus/Plus Query 37173 AAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTT 37232 ||||| || ||||||||||| | |||||| ||||| |||| ||| || || || || Sbjct 43762 AAACAAGCGAAATCACAATGAAGACCTTCGTCTCTTGAGATCAGTTCGTTGGAGAAAGTA 43821 Query 37233 AATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGAT-CCAGAAAA 37291 | ||| ||||||||||||| ||| || | ||| || || | |||||| | || || || Sbjct 43822 AGTCCAGGCATTAAACCTCGTTTCTTCAACCAGAAAATAGAA-CAAAAGCTACCGGAGAA 43880 Query 37292 GAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATC 37351 ||| ||||||||||| ||||| || || | ||| | |||| || | ||| Sbjct 43881 GAAGATACCTTCAACGCAAGCAAAAGCCACGATTCGTTCAGCGAAGCTTTGAG----ATC 43936 Query 37352 AGAA-ATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTG 37410 | |||||||| | | ||| | ||| || | ||||| ||| |||||||||| Sbjct 43937 CGTCGATCCATTTCATCGCCCATTGTGCTTTCTTCGTTACACAAGGAATGGTTTCAATTG 43996 Query 37411 CTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTAT 37470 | |||||| | | | |||| ||||| | ||||||||||| | || | ||||| Sbjct 43997 CGCGGAAGAGATGATCTCTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTAT 44056 Query 37471 ACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAG 37530 |||| |||||||||||||| ||||| || || ||||| || ||||| | ||| || | Sbjct 44057 ACATCTCAGAGTGAATATTCTCAATCGCGATTTGAAATCCGTAAAAGGCACGAGCCTCGG 44116 Query 37531 ATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAG 37590 | | ||||||||| | || | | | || || || ||| || || || | Sbjct 44117 AGATCTGAACATCGGACATGAATCGGGTTGATAGATTCTCTAAAACGATGCCGTCTGATG 44176 Query 37591 CTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTT---TCATCATTTGATAATTTTT 37647 | || ||||| || || || | ||| || || |||| | || || ||| | | |||| Sbjct 44177 CGGCGAAGAAGGCGAGTACGTGTTTGATGAAGTGTCGTTCGTCGTCGTTTAAGGAATTTT 44236 Query 37648 TCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCCAATG 37707 ||| || | |||||| |||| ||| ||||| || ||||||| || || | Sbjct 44237 CCCAGTCGCGATTATCTTGAGATAGATCGACTTCTTCGGCGGTCCAGAATGAAGCTTCGG 44296 Query 37708 CACGTTTATACATCGTCCAAATATCATTATGTTGTATTGGAAATATTACA-AATCTATC 37765 | ||| |||||| ||| || | | || ||| ||||| || | |||| |||| ||| Sbjct 44297 CTTTTTTGTACATCTCCCATATCTGAGGATATTGGATTGGGAACA-TACAGAATCGATC 44354 >seq144 Length=115930 Score = 129 bits (142), Expect = 7e-25 Identities = 345/523 (66%), Gaps = 7/523 (1%) Strand=Plus/Minus Query 37176 CATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAAT 37235 || || ||||| || ||||| ||||| |||| | |||||||| ||||| |||||||| Sbjct 56097 CAAGCGAAATCGCAGTGTAAGCCTTCGTCTCGAGAGATCAATTCGTTAGAGAAGGTTAAA 56038 Query 37236 CCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGAT-CCAGAAAAGAA 37294 || ||||| | |||| ||| |||| ||| || || | ||| ||| | || || ||||| Sbjct 56037 CCAGGCATGAGTCCTCGTTTCTTAAGCCAGAAGATGGA-GCAGAAGCTACCGGAGAAGAA 55979 Query 37295 AATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAG- 37353 ||||||||||| || || ||||| | ||| | |||| ||| | ||| | Sbjct 55978 GATACCTTCAACGCAAGCGAAAGCTACGATTCGTTCAGCGAAGGTT----TGAGATCCGT 55923 Query 37354 AAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTT 37413 ||||| | | | ||| | ||| || || || ||| |||||||| || Sbjct 55922 CGATCCAAGTCATCGCCCACTGTGCTTTCTTCGCGACGCAAGGAATGGTTTCAATCGCGC 55863 Query 37414 TTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACA 37473 |||||| | | | |||| ||||| | || || ||||| | || | |||||||| Sbjct 55862 GGAAGAGATGATCTCTCTCTTTGTTATCTTTGATGTACGTATCGAGAAGGAGACTATACA 55803 Query 37474 TTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATA 37533 | || || |||||||| ||||| || ||||| || || || ||| | || || || | Sbjct 55802 TCTCGGAATGAATATTCTCAATCGCGATCTGGAATCCGTAGAAAGCACGCGCCTCCGAGA 55743 Query 37534 ATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTG 37593 ||||||||| | || | ||| | || || ||| || || || || | Sbjct 55742 CTTGAACATCTGACATGAATCGTGAAGCGAGATTCTCTAAAACGATACCGTCTGATGCGG 55683 Query 37594 CAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTTCCAAT 37653 | |||||||| || || | ||| || || || | |||| | | || || | ||||| Sbjct 55682 CGAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCACCGTCGTTTAGATTCTCCCAAT 55623 Query 37654 CATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAA 37696 | |||| ||||| ||| ||||| || ||||||| || Sbjct 55622 CGCGTCCGTCTTGTGATAGATCGACTTCTTCGGCGGTCCAGAA 55580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592258975072400