Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq308 154 1e-32 seq1 134 1e-26 seq275 131 1e-25 seq3586 125 6e-24 seq2666 109 4e-19 seq683 98.7 8e-16 seq516 82.4 6e-11 >seq308 Length=205501 Score = 154 bits (170), Expect = 1e-32 Identities = 178/240 (74%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| | ||| | || ||||||||||| |||||||| || || ||||||||||| Sbjct 131165 CCTCCTCTCAGACGAAGCACCAAATGAAGGGTTGATTCTTTCTGGATGTTGTAATCGGCA 131224 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | |||| || | || ||||| ||||| || | | |||||| || || || Sbjct 131225 AGAGTGCGACCATCCTCAAGCTGTTTACCAGCAAAGATGAGTCTCTGTTGGTCCGGAGGG 131284 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || |||||||| || ||| ||| | || || |||||||| | || ||| Sbjct 131285 ATTCCTTCCTTGTCTTGAATCTTAGCTTTAACATTGTCAACGGTGTCAGAGCTCTCAACT 131344 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTTACGCGAAGA 101482 || || || | |||||||| || | ||||| |||||||| |||||| |||||||| Sbjct 131345 TCTAGGGTAATGGTTTTGCCAGTGAGGGTTTTCACAAATATTTGCATGCCACCGCGAAGA 131404 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| || | | ||| | ||| | ||||| || || |||||||| || ||||| || | Sbjct 130479 TTCCACCGCGGAGACGGAGAACAAGGTGAAGAGTCGACTCTTTTTGGATGTTGTAGTCTG 130538 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | | ||| | |||| || | |||||||| ||||| || | | |||||| || || | Sbjct 130539 CAAGAGTACGACCATCCTCAAGCTGCTTACCAGCAAAGATGAGTCTCTGTTGGTCTGGTG 130598 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | || |||||||| |||||||| ||| || ||| | ||||||||||| || | || | Sbjct 130599 GGATCCCTTCTTTGTCTTGAATCTTTGCCTTCACATTATCTACAGTGTCTGAGCTCTCAA 130658 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 | || | ||| | ||||| ||||||| || || ||||| ||||||||| Sbjct 130659 CCTCCAAAGTTATGGTTTTTCCGGTTAGGGTCTTGACAAAAATCTGCATG 130708 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||| || || || || || || |||||||| || | ||| | | |||| || | ||| Sbjct 131417 TGAAGTGTTGACTCCTTCTGGATGTTGTAATCCGCAAGAGTCCGGCCATCCTCGAGCTGC 131476 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||| ||||| || | | ||| || || || || || |||||||||||||| || ||| Sbjct 131477 TTACCAGCAAAGATGAGCCTCTGCTGGTCCGGAGGGATTCCTTCTTTATCTTGGATCTTT 131536 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | ||||||||| |||| || |||||||| | || || || || Sbjct 131537 GCCTTGACGTTATCAATAGTGTCAGAGCTTTCAACCTCAAGAGTAATGGTCTTCCCTGTA 131596 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | ||| || ||||| || ||||| Sbjct 131597 AGAGTCTTAACAAAGATTTGCAT 131619 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| ||||| || || || || || |||||||| || | || | |||| || | || Sbjct 130960 ATGGAGGGTTGACTCCTTCTGAATGTTGTAATCAGCAAGTGTGCGACCATCTTCGAGCTG 131019 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || || ||||| | | |||||| || || | || ||||| || ||||| || || Sbjct 131020 CTTGCCGGCGAATATGAGTCTCTGTTGGTCTGGTGAGATCCCTTCCTTGTCTTGGATCTT 131079 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 |||||| | || || || || || |||| || || | ||| | ||||| ||||| Sbjct 131080 GGCCTTTACATTGTCAACGGTATCTGAGCTTTCAACCTCCAAAGTTATGGTTTTACCGGT 131139 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | || || || ||||||||||| Sbjct 131140 AAGGGTCTTGACGAATATCTGCAT 131163 >seq1 Length=111110 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| | ||| | || |||||||| || || ||||| || || |||||||||||| Sbjct 60647 CCTCCTCTCAGACGGAGCACCAAATGAAGCGTCGACTCTTTCTGGATGTTGTAATCGGCG 60588 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || || | || |||| |||||| || || || |||| |||||| ||||| || || Sbjct 60587 AGTGTCCTTCCGTCTTCCAGTTGCTTCCCGGCGAAGATCAGACGCTGCTGATCCGGTGGG 60528 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || ||||| || || || ||| | || | ||||| || | ||| || Sbjct 60527 ATTCCTTCCTTGTCTTGGATCTTCGCCTTCACATTGTCGATTGTGTCCGATGATTCAACC 60468 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || | ||| || || |||| ||||| || || |||||||| Sbjct 60467 TCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 60421 >seq275 Length=143682 Score = 131 bits (144), Expect = 1e-25 Identities = 173/240 (72%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| || || ||||||||||| || || ||||| || ||||||||||| Sbjct 123672 CCTCCACGAAGACGCAACACCAAATGAAGGGTTGACTCCTTTTGAATGTTGTAATCGGCC 123613 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| || | ||||| || || || || | |||||| || || || ||| Sbjct 123612 AAGGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGA 123553 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| ||||| || || || ||| || | || | ||||||||| | || ||| Sbjct 123552 ATACCTTCCTTATCCTGGATCTTGGCTTTGACGTTGTCAATAGTGTCAGAGCTCTCGACT 123493 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTTACGCGAAGA 101482 ||||| |||| || || ||||| | ||| || || ||||| ||||| | | |||||| Sbjct 123492 TCAAGGGTGATTGTCTTCCCGGTGAGAGTCTTCACGAATATTTGCATACCTCCACGAAGA 123433 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| || || ||||||||||| || || || || |||||||||||||| Sbjct 139782 CCTCCACGAAGACGCAAGACCAAATGAAGGGTTGACTCCTTCTGGATATTGTAATCGGCC 139723 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| || | ||||| || || || ||||| | ||| || || || || Sbjct 139722 AAGGTACGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGG 139663 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || ||||| ||||| || || ||| || | || | |||||||| | ||||| Sbjct 139662 ATACCCTCTTTGTCTTGGATCTTGGCTTTCACGTTGTCAATGGTGTCAGAGCTCTCCACC 139603 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || | || || || || || || || || || |||||||| Sbjct 139602 TCGAGGGTAATGGTCTTACCAGTCAAGGTCTTGACGAAGATCTGCAT 139556 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| || || || |||||||| || || || || |||||||||||||| Sbjct 123444 CCTCCACGAAGACGCAAGACCAAGTGAAGGGTTGACTCCTTCTGAATATTGTAATCGGCC 123385 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| || | ||||| || || || ||||| | ||| || || || || Sbjct 123384 AAGGTACGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGG 123325 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || ||||| ||||| || || ||| || | || | ||||| || | ||||| Sbjct 123324 ATACCCTCTTTGTCTTGGATCTTGGCTTTCACGTTGTCAATGGTGTCGGAGCTCTCCACC 123265 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || | || || || || || || || || || |||||||| Sbjct 123264 TCGAGGGTAATGGTCTTACCAGTCAAGGTCTTGACGAAGATCTGCAT 123218 >seq3586 Length=17470 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || |||||||| || | ||| || || ||||| |||||||| || || ||||||||||| Sbjct 5535 CCACCTCTTAATCGGAGAACCAAGTGGAGGGTTGATTCTTTCTGGATGTTGTAATCGGCC 5476 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | |||| || | || || || || || ||||| | || ||||| || ||| Sbjct 5475 AAGGTACGGCCATCTTCTAGCTGTTTTCCGGCGAAGATCAACCTTTGCTGATCCGGAGGA 5416 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||| ||||| ||||| ||| || ||| | || | || ||||| | || || Sbjct 5415 ATGCCTTCCTTATCCTGAATCTTTGCCTTAACATTGTCGATGGTATCAGAGCTCTCGACA 5356 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||||| || ||||| || | ||||| || || | ||||| Sbjct 5355 TCGAGAGTGATGGTCTTGCCAGTGAGTGTTTTCACGAAAACTTGCAT 5309 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| | ||| | ||| |||||||| || || || ||||| || ||||| || ||| Sbjct 5763 CCACCTCTCAGACGAAGAACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGCG 5704 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| || | |||||||| ||||| || | | ||| ||||| || || Sbjct 5703 AGTGTGCGACCATCCTCAAGCTGCTTACCGGCAAAGATAAGTCTCTGCTGATCCGGAGGG 5644 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || || || || || || ||| | || | ||||||||| | || || Sbjct 5643 ATACCTTCCTTGTCCTGGATCTTAGCCTTGACATTATCAATAGTGTCAGAGCTCTCGACC 5584 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | ||||| ||||||||||| | || || ||||| |||||||| Sbjct 5583 TCCAAAGTGATGGTTTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 5537 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| || || | |||||||| ||||| || || || ||||| || || | || | | Sbjct 6208 ACGCAACACAAGGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCAGCCAGTGTGCGACC 6149 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| || | || || || || || || | | ||| || || || || || || ||||| Sbjct 6148 ATCCTCAAGCTGTTTCCCAGCGAAGATAAGCCTCTGCTGGTCCGGTGGGATTCCCTCTTT 6089 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 |||||| || || || ||| | || | ||||| || | || || || || || | Sbjct 6088 ATCTTGGATCTTAGCCTTGACATTGTCGATTGTGTCTGAGCTCTCAACCTCGAGGGTAAT 6029 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || |||| |||||| ||||| |||||||| Sbjct 6028 GGTTTTCCCTGTTAGAGTTTTGACAAAGATCTGCAT 5993 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| | ||| | || | || ||||| || || || || || ||||| || ||| Sbjct 5991 CCACCTCTGAGACGAAGGACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCG 5932 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| || | |||||||| || || || | | || || || || || Sbjct 5931 AGTGTGCGACCATCCTCAAGCTGCTTACCAGCGAAGATGAGTCTTTGCTGGTCCGGAGGG 5872 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || || ||||| || || ||| | || | |||||| || | || || Sbjct 5871 ATTCCTTCCTTGTCCTGAATCTTAGCCTTGACATTATCGATAGTGTCTGAGCTCTCGACC 5812 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || | || | ||||||||||| | || || ||||| ||||||||| Sbjct 5811 TCCAACGTAATGGTTTTGCCGGTGAGGGTCTTAACAAAGATCTGCATG 5764 >seq2666 Length=20083 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || |||| | ||| || || | |||||| || || |||| |||||||||||||| || Sbjct 9510 CCACCTCGAAGACGCAACACAAGATGAAGTGTTGACCCTTTCTGTATATTGTAATCCGCA 9569 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | |||| || | |||||| || || || || | | ||||| || || || Sbjct 9570 AGAGTACGACCATCCTCAAGTTGCTTGCCAGCGAAGATAAGTCTTTGTTGGTCCGGAGGG 9629 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 | ||| |||||||||| || ||| || | | || |||||||| || |||| ||| Sbjct 9630 ACTCCTGCTTTATCTTGGATCTTTATCTTGATGTTATCAACAGTGTCGGAGCTTTCAACT 9689 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 ||||||| | || ||||| || | ||| || || || || |||||| Sbjct 9690 TCAAGAGCTATGGTCTTGCCTGTAAGAGTCTTCACGAAGATTTGCATG 9737 >seq683 Length=32930 Score = 98.7 bits (108), Expect = 8e-16 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 ||||| || |||| ||||| ||||| || || |||||||| || | ||||| |||| Sbjct 24626 AAAACCAAGTGAATTGTAGACTCTTTCTGAATGTTGTAATCAGCTAAAGTTCGACCATCT 24567 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATC 101376 || ||||| ||||| ||||||||||| | ||||||||| || || || || ||||| || Sbjct 24566 TCTAATTGTTTACCAGCAAATATCAACCTCTGTTGATCTGGTGGTATCCCCTCTTTGTC 24508 >seq516 Length=37039 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||| || || || || || || |||||||| || | ||| | |||| || | ||| Sbjct 10242 TGAAGTGTTGACTCCTTCTGAATGTTGTAATCAGCAAGAGTGCGACCATCTTCGAGCTGC 10301 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || ||||| | | ||||| || || || || ||||| || ||||| || || Sbjct 10302 TTGCCGGCGAATATGAGTCTTTGTTGGTCTGGTGGGATCCCTTCCTTGTCTTGGATCTTG 10361 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | || || || |||| || || | ||| | ||||| ||||| Sbjct 10362 GCCTTCACATTGTCAATGGTATCTGAGCTTTCAACCTCCAAAGTTATGGTTTTACCGGTA 10421 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || || ||||||||||| Sbjct 10422 AGGGTCTTGACGAATATCTGCAT 10444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396240680488170