Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq308 111 1e-19 seq3586 105 5e-18 seq275 98.7 8e-16 seq516 96.9 3e-15 >seq308 Length=205501 Score = 111 bits (122), Expect = 1e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||||||||| || ||||| || | ||| | ||| | || || | ||||||||| ||||| Sbjct 130516 CTCTTTTTGGATGTTGTAGTCTGCAAGAGTACGACCATCCTCAAGCTGCTTACCAGCAAA 130575 Query 48635 TATCAGTCGCTGTTGATCCG-TGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAG 48693 || |||| |||||| || | ||||| | || || ||||| ||||||| || ||| Sbjct 130576 GATGAGTCTCTGTTGGTCTGGTGGGATC-CCTTCTTTGTCTTGAATCTTTGCCTTCACAT 130634 Query 48694 AACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTA 48753 | | |||| ||||| ||| ||||||| || || |||||||| || | || || | Sbjct 130635 TATCTACAGTGTCTGAGCTCTCAACCTCCAAAGTTATGGTTTTTCCGGTTAGGGTCTTGA 130694 Query 48754 CAAAAATCTGCAT 48766 ||||||||||||| Sbjct 130695 CAAAAATCTGCAT 130707 Score = 105 bits (116), Expect = 5e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| || ||||| || | ||||| || || || ||| || || || |||||||||| Sbjct 130708 GCCACCTCTTAGACGAAGGACCAAGTGCAGGGTTGACTCCTTCTGGATGTTGTAATCAGC 130767 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| ||||| | || || | ||| ||||| || || || |||| |||||| |||| || Sbjct 130768 AAGAGTTCGACCATCCTCAAGCTGTTTACCAGCGAAGATGAGTCTCTGTTGGTCCGGAGG 130827 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTT-ACAGAACCCACAGACTCTGACGCCTCCA 48717 | || |||||||| || |||||| || ||| | || | || || ||||| Sbjct 130828 GATCCCTTCCTTGTCTTGGAT-TTTTGTCTTCACATTGTCGACTGTGTCCGAGCTCTCCA 130886 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 | |||| || || |||||||| || | || || ||||||||||||||| Sbjct 130887 CTTCCAAAGTTATGGTTTTTCCGGTAAGGGTCTTAACAAAAATCTGCATC 130936 >seq3586 Length=17470 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| || || || || | |||||||| || ||| ||| ||||| || ||||| |||| Sbjct 5764 GCCACCTCTCAGACGAAGAACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGC 5705 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | ||| | || || | ||||||||||||||| || |||| ||| ||||||| || Sbjct 5704 GAGTGTGCGACCATCCTCAAGCTGCTTACCGGCAAAGATAAGTCTCTGCTGATCCGGAGG 5645 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | || |||||||| ||||| || ||| | | | || || || ||| || Sbjct 5644 GATACCTTCCTTGTCCTGGATCTTAGCCTTGACATTATCAATAGTGTCAGAGCTCTCGAC 5585 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || ||||| || || | || || ||||| |||||||| Sbjct 5584 CTCCAAAGTGATGGTTTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 5537 >seq275 Length=143682 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || ||| || || || ||||| |||| || | ||| | || || Sbjct 124111 ACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCAAGTGTGCGACCATCCTCA 124052 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| || || || || || ||||| ||||||| || | ||| |||||||| Sbjct 124051 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGAGGGATGCCTTCCTTGTCCTGG 123992 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || ||| | | | | ||||| ||||||||||| || || || ||| Sbjct 123991 ATCTTGGCCTTAACATTATCAATGGTGTCTGAGCTCTCCACCTCCAGTGTGATGGTCTTT 123932 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| || || ||||||||||| Sbjct 123931 CCGGTCAAAGTCTTCACGAAAATCTGCAT 123903 >seq516 Length=37039 Score = 96.9 bits (106), Expect = 3e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || ||||| || ||||| || | ||| | ||| | || || | ||||||||| ||||| Sbjct 10026 TCCTTTTGGATGTTGTAGTCTGCAAGAGTACGACCATCCTCAAGCTGCTTACCAGCAAAG 10085 Query 48636 ATCAGTCGCTGTTGATCCG-TGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || |||| ||||| || | ||||| | || || ||||| ||||||| |||||| Sbjct 10086 ATGAGTCTTTGTTGGTCTGGTGGGATC-CCTTCTTTGTCTTGAATCTTTGCCTTTACATT 10144 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | | ||||| ||| ||||||| || || ||||| || || | ||||| || Sbjct 10145 ATCTATTGTGTCTGAGCTCTCAACCTCCAAAGTTATGGTTTTGCCAGTTAGGGTTTTCAC 10204 Query 48755 AAAAATCTGCAT 48766 |||||||||||| Sbjct 10205 AAAAATCTGCAT 10216 Score = 91.5 bits (100), Expect = 1e-13 Identities = 138/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||||||||| || |||||||| | || | | ||| | || || | |||||| || ||||| Sbjct 9797 CTCTTTTTGGATGTTGTAATCCGCTAAAATGCGACCATCTTCTAGCTGCTTCCCCGCAAA 9856 Query 48635 TATCAGTCGCTGTTGATCCG-TGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAG 48693 || || | ||| || |||| | ||| | || || ||||| ||||||| || ||| Sbjct 9857 GATAAGCCTCTGCTGGTCCGGTTGGATC-CCTTCTTTGTCATGAATCTTTGCCTTGACAT 9915 Query 48694 AACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTA 48753 | || | || || ||| ||||| | | || || || ||||||||||| || | Sbjct 9916 TGTCAACCGTATCAGAACTCTCGACCTCAAGAATGATGGTCTTGCCCGTCAAAGTCTTGA 9975 Query 48754 CAAAAATCTGCATC 48767 |||||||||||||| Sbjct 9976 CAAAAATCTGCATC 9989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380901340692630