Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq1269 145 8e-30 >seq1269 Length=73620 Score = 145 bits (160), Expect = 8e-30 Identities = 335/470 (71%), Gaps = 46/470 (10%) Strand=Plus/Minus Query 163063 GTATTCGGTGGTTCACT-CTTTAGTGCTATGCACGGTT-CTCTTGTTACTTCTTCTCT-T 163119 |||||||| | | | || ||||||||||||||| |||| || | || |||||| | | | Sbjct 6680 GTATTCGGCGCTGCCCTACTTTAGTGCTATGCATGGTTCCTTTGGTAACTTCTAGTTTGT 6621 Query 163120 ATCAGAGAAACTACTGAGCAAGAGTC-ACAGAACTACGGTTA---TAAGTTCGG-ACAAG 163174 ||||| ||||| || || | || || | | | ||||| | ||||| |||| Sbjct 6620 ATCAGGGAAACCACAGAAAATGAATCTGCTAATGCAAGGTTAGGCCAGATTCGGTCCAAG 6561 Query 163175 AAGAAGAG-ACTTACAACA-TTGTT--GCTGCTCATGGATA-CTTTGGTCGCTTG--ATC 163227 |||||||| |||||||||| ||||| ||||||||||| || ||||| || ||| ||| Sbjct 6560 AAGAAGAGAACTTACAACATTTGTTAGGCTGCTCATGGTTATTTTTGGCCGATTGACATC 6501 Query 163228 TTCCAGTATGCATCTT---TCAACAACT-CACGTTCACTTCACTTCTTC-CT-TGCTGCA 163281 ||||| ||||| || ||||||||| | ||||| | || |||||| || || || Sbjct 6500 TTCCAATATGCTAGTTTCATCAACAACTCCTCGTTCTTTACATTTCTTCTCTAGGCGGCT 6441 Query 163282 T-TCCCTGTGGT-CTGCATCTG-GTTCAC-TGCAATGGGTGTGT-CAACTATGGCATTCA 163336 | ||| || || | || || ||| || ||| | ||| | | | ||||||| |||| Sbjct 6440 TGGCCCGGTAGTAGGGTATTTGTGTTTACTTGCTTTAGGTTTATGTAGCTATGGCTTTCA 6381 Query 163337 ACCTTAACGGTTTCAACTTCAACC-----AATC--CGTCGTTGA-CGCAGG---TGGTAA 163385 |||| || |||||||| ||||||| |||| || ||||| ||| | || | Sbjct 6380 ACCTAAATGGTTTCAATTTCAACCCCCCAAATCAGTGTAGTTGATAGCAAGGACGTGTTA 6321 Query 163386 AGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTT-GGTATGGAAGTTAT-G 163443 | ||| ||||||||| ||||| ||||| | | ||| |||||||||||||| | Sbjct 6320 ATTGA---ATACTTGGGCTGATATTATTAACCGTGGTAACCTTGGGTATGGAAGTTATGG 6264 Query 163444 CACGAGCGTA-ATGCTC--AC-AACTTCCCACTTGACCTTGCTGCTGCTG 163489 || || |||| | |||| || ||||||||||| ||||| ||||||| || Sbjct 6263 CATGAACGTACACGCTCCAACGAACTTCCCACTAGACCTAGCTGCTGTTG 6214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553030805096400