Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq317 143 3e-29 seq1269 102 9e-17 seq1129 82.4 9e-11 >seq317 Length=114279 Score = 143 bits (158), Expect = 3e-29 Identities = 172/231 (74%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 164021 ACTCCTGAGGGAGA--AACAG-TTGTCCAGTGTGAAGAGGATCAATACATTCTAGACGCA 164077 || ||||| ||||| || || ||| |||||||||| || ||| | || |||||| Sbjct 8556 ACACCTGAAGGAGAGCAAGAGATTG---AGTGTGAAGAAGACGTTTACGTCCTCGACGCA 8612 Query 164078 GCAGAAGAAGCAGGAGTTGATATTAATTACTCTTGTCGTGCTGGTGCTTGCTCCTCATGT 164137 || || ||||| ||| |||| | |||||| || ||||||||| ||||||| | ||| Sbjct 8613 GCTGAGGAAGCTGGAATTGACTTGCCTTACTCATGCCGTGCTGGTTCTTGCTCAACCTGT 8672 Query 164138 GCAGGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTCATTCCTAGACGATGAT 164197 || |||||| ||| ||||| |||||||||||| ||| ||| ||||| || ||||| Sbjct 8673 GCTGGTAAAGTTGAGTCTGGTACTGTTGATCAGTCTGACCAGAGTTTCCTTGATGATGAA 8732 Query 164198 CAGATTGCAGCAGGATTCGTGCTTACGTGTGTAGCATATCCAACATCTGAT 164248 ||||||| | ||||| || || || |||| || ||||| || |||||| Sbjct 8733 CAGATTGGTGAAGGATATGTTCTCACTTGTGCGGCTTATCCTACTTCTGAT 8783 >seq1269 Length=73620 Score = 102 bits (112), Expect = 9e-17 Identities = 249/352 (71%), Gaps = 34/352 (10%) Strand=Plus/Minus Query 163564 CAAGAAGAAGAGA-CATACAACATC-GTT--GCAGCACATGGCTACTTC-GGTCGTTTGA 163618 ||||||||||||| | |||||||| ||| || || ||||| || || || || |||| Sbjct 6564 CAAGAAGAAGAGAACTTACAACATTTGTTAGGCTGCTCATGGTTATTTTTGGCCGATTGA 6505 Query 163619 --TCTTCCAATATGCATCATTCAACAACAGCAGAAG--TCTTCAC--TTCTTC-CT-GGC 163670 ||||||||||||| |||| ||||| | |||| || |||||| || ||| Sbjct 6504 CATCTTCCAATATGCTAGTTTCATCAACAACTCCTCGTTCTTTACATTTCTTCTCTAGGC 6445 Query 163671 AGCATGGCCTG-TCGTCGGA-ATCTG-GTTTACT-GCACTGGGCGTAAGCACC-ATGGCA 163725 || ||||| | | || || || || ||||||| || | || || | | | ||||| Sbjct 6444 GGCTTGGCCCGGTAGTAGGGTATTTGTGTTTACTTGCTTTAGGTTTATGTAGCTATGGCT 6385 Query 163726 TTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCC-------TTGATGGTCAGGGTCG 163778 |||||||| || |||||||| ||||||| | | | ||||| | || || || Sbjct 6384 TTCAACCTAAATGGTTTCAATTTCAACCCCCCAAATCAGTGTAGTTGATAG-CAAGGACG 6326 Query 163779 TGTGC--TCAACACTTGGGCAGACGTGCTTAACCGCGCTGGTCT-GGGTATGGAAGTTAT 163835 ||| | || |||||||| || | ||||||| | | || ||||||||||||||| Sbjct 6325 TGTTAATTGAATACTTGGGCTGATATTATTAACCGTGGTAACCTTGGGTATGGAAGTTAT 6266 Query 163836 G-CATGAGCGTA-ACGCAC--AC-AACTTCCCACTCGATCTTGCTGCTGCTG 163882 | ||||| |||| |||| | || ||||||||||| || || ||||||| || Sbjct 6265 GGCATGAACGTACACGCTCCAACGAACTTCCCACTAGACCTAGCTGCTGTTG 6214 >seq1129 Length=53819 Score = 82.4 bits (90), Expect = 9e-11 Identities = 141/202 (70%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 164053 AGAGGATCAATACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTACTCTTG 164112 ||| || |||||||| | || ||||| ||||| ||||||||||| | ||||||||| Sbjct 9098 AGACGACCAATACATCTTGGATGCAGCTGAAGAGGCAGGAGTTGAGTTACCTTACTCTTG 9039 Query 164113 TCGTGCTGGTGCTTGCTCCTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAG 164172 | |||||||| || ||| | || || ||||| ||||| | || | ||||| ||| Sbjct 9038 CAGAGCTGGTGCGTGTTCCACTTGCGCTGGTAAGATTGTTACGGGCAACGTTGACCAGTC 8979 Query 164173 TGATCAGTCATTCCTAGACGATGATCAGATTGCAGCA-GGATTCGTGCTTACGTGTGTAG 164231 ||| || || || |||||| | | ||| || | || | || | || ||||| | Sbjct 8978 GGATGGTTCGTTTCTCGACGAT-AGCCACTTGGAGAATGGTTATGTCTTGACTTGTGTGG 8920 Query 164232 CATATCCAACATCTGATTGTGT 164253 | || ||| ||||| ||||| Sbjct 8919 CTTACCCACAGTCTGACTGTGT 8898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563154616662800